EVA results for 1js9:B

DATE : 2002_04_03
TYPE : sec
NRES : 165
HEADER : VIRUS/VIRAL PROTEIN
COMPND : 2 MOLECULE: COAT PROTEIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: BROME MOSAIC VIRUS;
AUTHOR : R.W.LUCAS, S.B.LARSON, A.MCPHERSON

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,
seq	ARVQPVIVEPLAAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR
dssp	--------------------------EEE--EE---E----EEEEE----HHH--HHHH------EEEEEEE-------EEEEEEE-----HHHHH-----EE------EEEE--------------EEEEEEE---E----EEEEEEEE---------------
apssp	-----EEE---------HHHHH---EE-EE----HHHHHHHEEEEEEE----------HHHHH-EEEEEE---------EEEEEHHHHHHHHHHHHHHHHEE---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----EEEEEEEEE------------E-	-23.8	-29.2	-0.23
apssp2	-----EEEEE------EEEEEEE--EEEEEE----HHEEEEEEEEEEE----HHHH-----EHHHHHHHHHHHH-----EEEEEHH--HHHHHHHHHHHHH----HHHHHHH--HHH----HHHHH--EEEEEE--------EEEEEEEEE--------------	-29.7	-39.1	-0.43
jpred	-----EEEE--------EEEEE---EEEEEE----HHHHHHH--EEEE-----HHHHHHHHHH-EEEEEE--------EEEEEEE-----HHHHHHHHHHH----HHHEEHHH-------HHHHHHHHHHHHHHHHHHH---EEEEEEEEE--------------	-19.1	-20.7	-0.23
phd	------EE-HHHHHHHHHHHHH--EEEEE-----HHHHHH---EEEEE---HHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHH----EEEEEHHHHHHH---EEEEEEEEE--------------	-25.8	-32.1	-0.12
phdpsi	-----EEE-HHHHHHHHHHHHH---EEEE-----HHHHHHH---EEEE---HHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---EEEEEEEEE--------------	-36.9	-41.1	-0.24
prof_king	----EEEEEE------EEEEEEEEEEEEEEEE----EEEEEEEEEEEE-----------EEEEEEEEEEEE-------EEEEEEEEEE--HHHHHHHEEEE----HHHEEEEEE-------------EEEEEEE--------EEEEEEEE---------------	-8.9	-14.8	-0.10
profsec	-----EEEE-----HHHHHHHHH--EEE------HHHHHHHH---EEE------HHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHH------EEEEEEEE--------------	-39.1	-41.9	-0.32
psipred	-----EEEEE------EEEEEEE--EEEEEE-----EEEEEEEEEEEE--HHHHHH------HHHHHHHHHHHH----EEEEEE------HHHHHHHHHH-----HHHHHHH--HH-----HHHH---EEEEEE--------EEEEEEEEE--------------	-18.0	-30.4	-0.26
sspro2	----EEEEEE-H----HEEEEEE-EEEEEEEE--HHEEEEEEEEEEE----HHHHHHHHH-HHHHHHHHH---HH-H-HEHHEEHHH-HHHHHHHHHHHHH----HHHHHHH-HHHH----HH-HHHHHEEEHHHHH-----EEEEEEEE---------------	-28.9	-43.6	-0.27

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Apr 10, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva