EVA results for 1ict:A

DATE : 2002_04_03
TYPE : sec
NRES : 116
HEADER : TRANSPORT PROTEIN
COMPND : 2 MOLECULE: TRANSTHYRETIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
AUTHOR : A.WOJTCZAK, P.NEUMANN, V.CODY

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,.
seq	CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP
dssp	--EEEEEEE----EE----EEEEEEE-----EEEEEEEE-----E------------EEEEEEE-HHHHHHHH-----EEEEEEEEEE------EEEEEEEEE--EEEEEE--E--
apssp	--EEEEEEE----EE----EEEEEEE-----EEEEEEEE-----EE-----------EEEEEEE--HHHHH-------E--EEEEEE--------EEEEEEE---EEEEEEEEE--	+15.1	+17.7	+0.25
apssp2	--EEEEEEE----EE----EEEEEEE-----EEEEEEEE-----EE-----------EEEEEEE-HHHHHHH------E-EEEEEEEE------EEEEEEEEE--EEEEEEEEE--	+12.0	+10.0	+0.25
jpred	---EEEEEE---------EEEEEEEE------EEEE----------------------EEEEEEE---HHH---------EEEEEEEE------EEEEEEEE------EEEEE---	+4.0	+7.6	+0.03
phd	---EEEEEE---------EEEEEEEE-----HHHH----------EEEE------EEEEEEEEE--HHHHHH------EEEEEEEEEE------EEEEEEEE-----EEEEEEE--	+7.5	+12.8	+0.09
phdpsi	---EEEEE----------EEEEEEEE------EEEEEEE-------------------EEEEEEE-HHHHHH------EEEEEEEEEEE-----EEEEEEEEE----EEEEEEE--	+11.6	+15.7	+0.20
prof_king	--EEEEEEE--------EEEEEEEEE-----EEEEEEEEE-----E------------EEEEEEE--HHHHH-------EEEEEEEEE------EEEEEEEE-----EEEEEEE--	+9.5	+18.0	+0.14
profsec	---EEEEE----------EEEEEEEE-----EEEEEEEEE------------------EEEEEEE-HHHHHH--------EEEEEEEEE-----EEEEEEEEE----EEEEEEE--	+7.7	+12.8	+0.12
psipred	---EEEEEE----------EEEEEEE-----EEEEEEEE------------HHH----EEEEEEEHHHHHHH--------EEEEEEEE-------EEEEEEE----EEEEEEE---	+7.0	+6.4	+0.10
sspro2	---EEEEEE---------EEEEEEEE-------E-----------------HHH----EEEEEEE-HHHHHH---------EEEEEEE-------EEEEEE-------EEEEE---	-4.1	-2.5	-0.05

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Apr 10, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva