EVA: Detailed information for proteins added on: 2002_03_13

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_03_13	1j4w	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: FUSE BINDING PROTEIN; CHAIN: A; FRAGMENT: RESIDUES 278-447, NUMBERERED 5-174. KH3 AND KH4 DOMAINS.; SYNONYM: FBP, FAR UPSTREAM BINDING ELEMENT PROTEIN; ENGINEERED: YES; MUTATION: YES; MOLECULE: DNA (5'- D(GPTPATPAPTPTPCPCPCPTPCPGPGPGAPTPTPTPT PTPTPAPTPTPTPTPGP*T)-3'); CHAIN: B; ENGINEERED: YES; OTHER_DETAILS: FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE	HOMO SAPIENS; HUMAN; SYNTHETIC: YES	G.M.CLORE,D.T.BRADDOCK
2002_03_13	1jjg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: M156R; CHAIN: A; ENGINEERED: YES	MYXOMA VIRUS; VIRUS; GENE: M156R;	T.A.RAMELOT,J.R.CORT,A.A.YEE,C.H.ARROWSMITH,M.A.KENNEDY
2002_03_13	1jo8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: ACTIN BINDING PROTEIN; CHAIN: A; FRAGMENT: SH3 DOMAIN; SYNONYM: ABP1P; ACTIN-BINDING PROTEIN ABP1; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST;	B.FAZI,M.J.COPE,A.DOUANGAMATH,S.FERRACUTI,K.SCHIRWITZ, A.ZUCCONI,D.G.DRUBIN,M.WILMANNS,G.CESARENI,L.CASTAGNOLI
2002_03_13	1i60	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: IOLI PROTEIN; CHAIN: A; ENGINEERED: YES	BACILLUS SUBTILIS; BACTERIA; GENE: IOLI OR B65B;	R.ZHANG,I.DEMENTIVA,F.COLLART,E.QUAITERANDALL,A.JOACHIMIAK
2002_03_13	1kil	E	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: SYNAPTOBREVIN SNARE MOTIF; CHAIN: A; FRAGMENT: SNARE MOTIF (29-93); SYNONYM: VESSICLE ASSOCIATED MEMBRANE PROTEIN 2B; ENGINEERED: YES; MOLECULE: SYNTAXIN SNARE MOTIF SHORT; CHAIN: B; FRAGMENT: SNARE MOTIF (191-253); SYNONYM: SYNAPTOTAGMIN ASSOCIATED ASSOCIATED 35 KDA PROTEIN; ENGINEERED: YES; MOLECULE: SNAP-25 N-TERMINAL SNARE MOTIF; CHAIN: C; FRAGMENT: SNARE MOTIF (11-82); SYNONYM: SYNAPTOSOMAL-ASSOCIATED PROTEIN 25KD; ENGINEERED: YES; MUTATION: YES; MOLECULE: SNAP-25 C-TERMINAL SNARE MOTIF; CHAIN: D; FRAGMENT: SNARE MOTIF (141-203); SYNONYM: SYNAPTOSOMAL-ASSOCIATED PROTEIN 25KD; ENGINEERED: YES; MUTATION: YES; MOLECULE: COMPLEXIN I SNARE-COMPLEX BINDING REGION; CHAIN: E; FRAGMENT: COMPLEXIN (RESIDUES 26-83); ENGINEERED: YES	RATTUS NORVEGICUS; RAT; GENE: SYNAPTOBREVIN 2; RATTUS NORVEGICUS; RAT; GENE: SYNTAXIN 1A; HOMO SAPIENS; HUMAN; GENE: SNAP-25; HOMO SAPIENS; HUMAN; GENE: SNAP-25; RATTUS NORVEGICUS; RAT; GENE: COMPLEXIN 1;	X.CHEN,D.TOMCHICK,E.KOVRIGIN,D.ARAC,M.MACHIUS,T. C.SUDHOF, J.RIZO
2002_03_13	1kl9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1; CHAIN: A; FRAGMENT: RESIDUES 1-182; SYNONYM: EUKARYOTIC TRANSLATION INITIATION FACTOR 2 ALPHA SUBUNIT; EIF-2-ALPHA; EIF-2ALPHA; EIF-2A; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	M.C.NONATO,J.WIDOM,J.CLARDY

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field