EVA results for 1koo:D

DATE : 2002_02_27
TYPE : sec
NRES : 169
HEADER : RNA BINDING PROTEIN
COMPND : 2 MOLECULE: TIP ASSOCIATING PROTEIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
AUTHOR : D.N.HO, G.A.COBURN, Y.KANG, B.R.CULLEN, M.M.GEORGIADIS

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....
seq	LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPP
dssp	--HHHHHHHHHHHHHHEE----EEE---------------------HHHHHHHHHHHHHH-----EEE---------HHHHHH--------EEE----------HHHHH------EEE--------------HHHH-HHHH-----EE---E-----------------
apssp	---HHHHHHHHH----E-----HHH---------HH------EHH----HHHHHHHHH----------------EE----HH---------E----------------------HHH---------------HHHHHHH------HHH---------------------	-2.0	-11.9	-0.16
jpred	----HHHHHHHHHH--------------------------EEE--------------------HHHH-------------HHHHH-----EEEE--------------------EEEEE------------HHHHHHH-------------------------------	-5.2	-14.1	-0.19
phd	-----HHHHHHHHHHH------EEEE-------HHHH----EEE------HHHHHHHHH----EEEEEE--------HHHHHHHHHH--EEEE---------------------EEEEE-------------HHHHHHHHHHHHHHHH---------------------	+4.4	-5.7	+0.02
phdpsi	---HHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHH----EEEEE----HHHHHHHHHHHHHHHHHHHHEE-HHHHHHHHHHHHHH-----EEEEE------------HHHHHHHHHHH-HHHH----------------------	-11.8	-15.3	-0.1
profsec	--HHHHHHHHHHHHHH--HHHHHH-HHH----HHHHH--HHHHH----HHHHHHHHHHH-----EEE------HHHHHHHHHHHHHHHH--EEE-----HHHHHHHHHHH-----EEEE------------HHHHHHHHHH--HHHH----------------------	-7.5	-13.6	-0.09
psipred	--HHHHHHHHHHHHH---HHHHHHHHH-----HHHHH----EEE-----HHHHHHHHHHHH---EEEE----EEEE---HHHHHHH-----EEE--------HHHHHHH-----EEEEE------------HHHHHHHHHH----------------------------	-2.7	-12.6	-0.10
sspro2	--HHHHHHHHHHHHHH--HHH----HHH----HHH----EEEEE---HHHHHHHHHHHHH----EEEEE---------HHHHHHHH-----EEE--------HHHHHHH----HHHHHH------------HHHHHHHHHH---------------EEEE---------	-2.9	-12.4	-0.06

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Mar 13, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva