EVA results for 1gsw:A

DATE : 2002_02_20
TYPE : sec
NRES : 122
HEADER : PHOTOSYNTHESIS
COMPND : 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: ECTOTHIORHODOSPIRA HALOPHILA;
AUTHOR : D.M.F.VAN AALTEN, W.CRIELAARD, K.J.HELLINGWERF, L.JOSHUA-TOR

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12.
seq	VAFGSEDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITSRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQMTPTKVKVHMKKALSGDSYWVFVKRV
dssp	-------HHHHHH------HHH---EEEEEE---EEEEE-HHHHHHH---HHHH---EHHHHH-HHH-----HHHHHHHHHH---EEEEEEEE------EEEEEEEEE-----EEEEEEEE-
apssp	-------HHHHHHH--HHHHH----EEEEEE---EEEEE-HHH--------HHH---EHHHHH---------HHHHHHHHHH---EEEEEEEE------EEEEEEEEE-----EEEEEEEE-	+14.9	+19.9	+0.37
jpred	-----HHHHHHHHH-----------EEEEE----EEEEEE-------------E-------------------------------EEEEEEEEE------EEEEEE--------EEEEEE--	-10.4	-11.2	+0.02
phd	-----HHHHHHHHHH--------EEEEEEE-----EEEEE-----E-------EEEEEE----------------EEEEEE-----HHHHHHEEEEE----EEHHHHHH----EEEEEEEE-	-20.8	-17.0	-0.12
phdpsi	-----HHHHHHHHH--HHHHHH----EEEE----EEEEEE-HHH---------EEEEHHHH--------HHHHHHHHHHE----HHHHHHHHHHH----EEEEEEEE------EEEEEEEE-	-10.6	+1.1	-0.08
prof_king	-----HHHHHHHH-----------EEEEEEE---EEEEEE-------------EE-----HH------------HEEE-------EEEEEEEEEE----EEEEEEEEE-----EEEEEEEE-	-5.3	-4.1	+0.07
profsec	----HHHHHHHHHH--HHHHH---EEEEEE-----EEEEE------------HHH--HHHH---------HHHHH--EEEEE--EEEEEEEEEEEEE--EEEEEEEEE-----EEEEEEEE-	-11.2	-2.9	-0.08
psipred	----HHHHHHHHH---HHHHH---EEEEEE-----EEEE-----------HHHHHHHHHHHH-------HHHHHHHHHHH----EEEEEEEEEE-----EEEEEEE-------EEEEEEE--	-5.5	+0.1	-0.00
sspro2	----HHHHHHHHH----HHH-----EEEEE-----EEEE-----------HHHH-----HH----------H--HHHH-------EEEEEEEEE------EEEEEE-------EEEEEEEE-	-5.4	+3.2	+0.04

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Feb 20, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva