EVA: Detailed information for proteins added on: 2001_08_01

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2001_08_01	1e5r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXYGENASE	MOLECULE: PROLINE OXIDASE; CHAIN: A, B	STREPTOMYCES SP.; STRAIN: TH1	I.J.CLIFTON,L.C.HSUEH,J.E.BALDWIN,C.J.SCHOFIELD,K.HARLOS
2001_08_01	1e5s	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXYGENASE	MOLECULE: PROLINE OXIDASE; CHAIN: A,B	STREPTOMYCES SP.; STRAIN: TH1	I.J.CLIFTON,L.C.HSUEH,J.E.BALDWIN,C.J.SCHOFIELD,K.HARLOS
2001_08_01	1hqb	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSPORT PROTEIN	MOLECULE: APO-D-ALANYL CARRIER PROTEIN; CHAIN: A; FRAGMENT: RESIDUES 2-81; SYNONYM: APO-DCP; ENGINEERED: YES	LACTOBACILLUS CASEI; BACTERIA; GENE: DLTC;	B.F.VOLKMAN,Q.ZHANG,D.V.DEBABOV,E.RIVERA,G.KRESHECK, F.C.NEUHAUS
2001_08_01	1i5k	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	BLOOD CLOTTING	MOLECULE: PLASMINOGEN; CHAIN: A, B; FRAGMENT: MODIFIED RECOMBINANT KRINGLE-2 DOMAIN; EC: 3.4.21.7; ENGINEERED: YES; MUTATION: YES; MOLECULE: M PROTEIN; CHAIN: C, D; FRAGMENT: VEK-30 (30 RESIDUE INTERNAL PEPTIDE); ENGINEERED: YES	PICHIA PASTORIS; YEAST; SYNTHETIC: YES; OTHER_DETAILS: VEK-30 WAS SYNTHESIZED BY AUTOMATED SOLID PHASE PEPTIDE SYNTHESIS	J.L.RIOS-STEINER,M.SCHENONE,I.MOCHALKIN,A.TULINSKY, F.J.CASTELLINO
2001_08_01	1ihr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN TRANSPORT	MOLECULE: TONB PROTEIN; CHAIN: A, B; FRAGMENT: C-TERMINAL DOMAIN RESIDUES 164-239; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; GENE: JM83;	C.CHANG,A.MOOSER,A.PLUCKTHUN,A.WLODAWER
2001_08_01	1jb0	C-D-F-I-J-K-L-M-X	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PHOTOSYNTHESIS	MOLECULE: PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1; CHAIN: A; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAA; MOLECULE: PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2; CHAIN: B; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAB; MOLECULE: PHOTOSYSTEM I IRON-SULFUR CENTER; CHAIN: C; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAC; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II; CHAIN: D; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAD; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV; CHAIN: E; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAE; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III; CHAIN: F; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAF; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII; CHAIN: I; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAI; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX; CHAIN: J; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAJ; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X; CHAIN: K; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAK; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI; CHAIN: L; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAL; MOLECULE: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII; CHAIN: M; SYNONYM: PHOTOSYSTEM I SUBUNIT PSAM; MOLECULE: PHOTOSYSTEM I SUBUNIT PSAX; CHAIN: X	SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA; SYNECHOCOCCUS ELONGATUS; BACTERIA	P.JORDAN,P.FROMME,H.T.WITT,O.KLUKAS,W.SAENGER,N.KRAUSS
2001_08_01	1jj2	G	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBOSOME	MOLECULE: 23S RRNA; CHAIN: 0; MOLECULE: 5S RRNA; CHAIN: 9; MOLECULE: RIBOSOMAL PROTEIN L2; CHAIN: A; SYNONYM: 50S RIBOSOMAL PROTEIN L2P, HMAL2, HL4; MOLECULE: RIBOSOMAL PROTEIN L3; CHAIN: B; SYNONYM: 50S RIBOSOMAL PROTEIN L3P, HMAL3, HL1; MOLECULE: RIBOSOMAL PROTEIN L4; CHAIN: C; SYNONYM: 50S RIBOSOMAL PROTEIN L4E, HMAL4, HL6; MOLECULE: RIBOSOMAL PROTEIN L5; CHAIN: D; SYNONYM: 50S RIBOSOMAL PROTEIN L5P, HMAL5, HL13; MOLECULE: RIBOSOMAL PROTEIN L6; CHAIN: E; SYNONYM: 50S RIBOSOMAL PROTEIN L6P, HMAL6, HL10; MOLECULE: RIBOSOMAL PROTEIN L7AE; CHAIN: F; SYNONYM: 50S RIBOSOMAL PROTEIN HS6; MOLECULE: RIBOSOMAL PROTEIN L10; CHAIN: G; SYNONYM: 50S RIBOSOMAL PROTEIN P0, HMAL10, L10E; MOLECULE: RIBOSOMAL PROTEIN L10E; CHAIN: H; MOLECULE: RIBOSOMAL PROTEIN L13; CHAIN: I; SYNONYM: 50S RIBOSOMAL PROTEIN L13P, HMAL13; MOLECULE: RIBOSOMAL PROTEIN L14; CHAIN: J; SYNONYM: 50S RIBOSOMAL PROTEIN L14P, HMAL14, HL27; MOLECULE: RIBOSOMAL PROTEIN L15; CHAIN: K; SYNONYM: 50S RIBOSOMAL PROTEIN L15P, HMAL15, HL9; MOLECULE: RIBOSOMAL PROTEIN L15E; CHAIN: L; MOLECULE: RIBOSOMAL PROTEIN L18; CHAIN: M; SYNONYM: 50S RIBOSOMAL PROTEIN L18P, HMAL18, HL12; MOLECULE: RIBOSOMAL PROTEIN L18E; CHAIN: N; SYNONYM: 50S RIBOSOMAL PROTEIN L18E, HL29, L19; MOLECULE: RIBOSOMAL PROTEIN L19E; CHAIN: O; SYNONYM: 50S RIBOSOMAL PROTEIN L19E, HMAL19, HL24; MOLECULE: RIBOSOMAL PROTEIN L21E; CHAIN: P; SYNONYM: 50S RIBOSOMAL PROTEIN L21E, HL31; MOLECULE: RIBOSOMAL PROTEIN L22; CHAIN: Q; SYNONYM: 50S RIBOSOMAL PROTEIN L22P, HMAL22, HL23; MOLECULE: RIBOSOMAL PROTEIN L23; CHAIN: R; SYNONYM: 50S RIBOSOMAL PROTEIN L23P, HMAL23, HL25, L21; MOLECULE: RIBOSOMAL PROTEIN L24; CHAIN: S; SYNONYM: 50S RIBOSOMAL PROTEIN L24P, HMAL24, HL16, HL15; MOLECULE: RIBOSOMAL PROTEIN L24E; CHAIN: T; SYNONYM: 50S RIBOSOMAL PROTEIN L24E, HL21/HL22; MOLECULE: RIBOSOMAL PROTEIN L29; CHAIN: U; SYNONYM: 50S RIBOSOMAL PROTEIN L29P, HMAL29, HL33; MOLECULE: RIBOSOMAL PROTEIN L30; CHAIN: V; SYNONYM: 50S RIBOSOMAL PROTEIN L30P, HMAL30, HL20, HL16; MOLECULE: RIBOSOMAL PROTEIN L31E; CHAIN: W; SYNONYM: 50S RIBOSOMAL PROTEIN L31E, L34, HL30; MOLECULE: RIBOSOMAL PROTEIN L32E; CHAIN: X; SYNONYM: 50S RIBOSOMAL PROTEIN L32E, HL5; MOLECULE: RIBOSOMAL PROTEIN L37AE; CHAIN: Y; MOLECULE: RIBOSOMAL PROTEIN L37E; CHAIN: Z; SYNONYM: 50S RIBOSOMAL PROTEIN L37E, L35E; MOLECULE: RIBOSOMAL PROTEIN L39E; CHAIN: 1; SYNONYM: 50S RIBOSOMAL PROTEINS L39E, HL39E, HL46E; MOLECULE: RIBOSOMAL PROTEIN L44E; CHAIN: 2; SYNONYM: 50S RIBOSOMAL PROTEIN L44E, LA, HLA	HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA; HALOARCULA MARISMORTUI; ARCHAEA	D.J.KLEIN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field