EVA: Detailed information for proteins added on: 2001_05_09

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2001_05_09	1c8b	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: SPORE PROTEASE; CHAIN: A, B; SYNONYM: GERMINATION PROTEASE; EC: 3.4.99.-; ENGINEERED: YES	BACILLUS MEGATERIUM; BACTERIA;	K.PONNURAJ,S.ROWLAND,C.NESSI,P.SETLOW,M.J.JEDRZEJAS
2001_05_09	1fwo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ORYZAIN BETA CHAIN; CHAIN: A; FRAGMENT: C-TERMINAL GRANULIN/EPITHELIN-LIKE EXTENSION (RESIDUES 382-416); EC: 3.4.22.-; ENGINEERED: YES; MUTATION: YES	SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PEPTIDE NATURALLY OCCURS IN ORYZA SATIVA (RICE).	D.TOLKATCHEV,P.XU,F.NI
2001_05_09	1g4y	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: CALCIUM-ACTIVATED POTASSIUM CHANNEL RSK2; CHAIN: B; FRAGMENT: CALMODULIN-BINDING DOMAIN; ENGINEERED: YES; MOLECULE: CALMODULIN; CHAIN: R; ENGINEERED: YES	RATTUS NORVEGICUS; RAT; GENE: RAT; RATTUS NORVEGICUS; RAT; GENE: RAT;	M.A.SCHUMACHER,A.RIVARD,H.P.BACHINGER,J.P.ADELMAN
2001_05_09	1i7w	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL ADHESION	MOLECULE: BETA-CATENIN; CHAIN: A, C; FRAGMENT: ARMADILLO DOMAIN; ENGINEERED: YES; MOLECULE: EPITHELIAL-CADHERIN; CHAIN: B, D; FRAGMENT: CYTOPLASMIC DOMAIN; SYNONYM: E-CADHERIN; ENGINEERED: YES	MUS MUSCULUS; MOUSE; GENE: CATNB; MUS MUSCULUS; MOUSE; GENE: CDH1;	A.H.HUBER,W.I.WEIS
2001_05_09	1ib2	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: PUMILIO 1; CHAIN: A; FRAGMENT: PUMILIO-HOMOLOGY DOMAIN (RESIDUES 828-1176); ENGINEERED: YES	HOMO SAPIENS; HUMAN;	X.WANG,P.D.ZAMORE,T.M.T.HALL
2001_05_09	1ija	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: SORTASE; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN (RESIDUES 60-206); ENGINEERED: YES	STAPHYLOCOCCUS AUREUS; BACTERIA; STRAIN: OS2;	U.ILANGOVAN,H.TON-THAT,J.IWAHARA,O.SCHNEEWIND,R.T.CLUBB

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field