EVA: Detailed information for proteins added on: 2001_02_21

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2001_02_21	1dc1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE/DNA	MOLECULE: BSOBI RESTRICTION ENDONUCLEASE; CHAIN: A, B; SYNONYM: TYPE II RESTRICTION ENZYME, TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE; EC: 3.1.21.4; ENGINEERED: YES; MOLECULE: DNA (5'-D(TAPTPAPCPTPCPGPAPGPTPAP*T)- 3'); CHAIN: W, C; ENGINEERED: YES	BACILLUS STEAROTHERMOPHILUS; BACTERIA; SYNTHETIC: YES; OTHER_DETAILS: DNA SEQUENCE DESIGNED FOR CRYSTALLIZATION BASED ON THE CENTRAL RECOGNITION SEQUENCE OF BACILLUS STEAROTHERMOPHILUS	M.J.VAN DER WOERD,J.J.PELLETIER,S.-Y.XU,A.M.FRIEDMAN
2001_02_21	1egu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: HYALURONATE LYASE; CHAIN: A; EC: 4.2.2.1; ENGINEERED: YES	STREPTOCOCCUS PNEUMONIAE; BACTERIA;	S.LI,S.J.KELLY,E.LAMANI,M.FERRARONI,M.J.JEDRZEJAS
2001_02_21	1eha	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: GLYCOSYLTREHALOSE TREHALOHYDROLASE; CHAIN: A; SYNONYM: TREHALOHYDROLASE, GTHASE; EC: 3.2.1.1; ENGINEERED: YES; MUTATION: YES	SULFOLOBUS SOLFATARICUS KM1;	M.D.FEESE,Y.KATO,T.TAMADA,M.KATO,T.KOMEDA,K.KOBAYASHI, R.KUROKI
2001_02_21	1ehk	A-C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: BA3-TYPE CYTOCHROME-C OXIDASE; CHAIN: A; FRAGMENT: SUBUNIT I; EC: 1.9.3.1; MOLECULE: BA3-TYPE CYTOCHROME-C OXIDASE; CHAIN: B; FRAGMENT: SUBUNIT II; EC: 1.9.3.1; MOLECULE: BA3-TYPE CYTOCHROME-C OXIDASE; CHAIN: C; FRAGMENT: SUBUNIT IIA; EC: 1.9.3.1	THERMUS THERMOPHILUS; BACTERIA; STRAIN: HB8; THERMUS THERMOPHILUS; BACTERIA; STRAIN: HB8; THERMUS THERMOPHILUS; BACTERIA; STRAIN: HB8	T.SOULIMANE,G.BUSE,G.P.BOURENKOV,H.D.BARTUNIK,R.HUBER, M.E.THAN
2001_02_21	1g47	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL ADHESION	MOLECULE: PINCH PROTEIN; CHAIN: A; FRAGMENT: LIM1 DOMAIN, RESIDUES 1-70; SYNONYM: PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: LIMS1;	A.VELYVIS,Y.YANG,C.WU,J.QIN
2001_02_21	1g8q	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE SYSTEM	MOLECULE: CD81 ANTIGEN, EXTRACELLULAR DOMAIN; CHAIN: A, B; FRAGMENT: EXTRACELLULAR DOMAIN; SYNONYM: CD81, TARGET OF ANTIPROLIFERATIVE ANTIBODY 1, 26 KDA CELL SURFACE PROTEIN TAPA-1; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	K.KITADOKORO,M.BOLOGNESI,D.BORDO,G.GRANDI,G.GALLI, R.PETRACCA,F.FALUGI
2001_02_21	1hqc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: RUVB; CHAIN: A, B; EC: 3.6.1.3; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA; GENE: RUVB;	K.YAMADA,N.KUNISHIMA,K.MAYANAGI,H.IWASAKI,K.MORIKAWA

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field