EVA: Detailed information for proteins added on: 2001_02_07

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2001_02_07	1dyp	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: KAPPA-CARRAGEENASE; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN; EC: 3.2.1.83; ENGINEERED: YES; MUTATION: YES; OTHER_DETAILS: COMPLEXED WITH CADMIUM CHLORIDE	PSEUDOALTEROMONAS CARRAGEENOVORA; PLASMID: PET20B; GENE: CGKA; OTHER_DETAILS: PROCESSED PROTEIN, HIS-TAG, SELEMETHIONYL PR	G.MICHEL,L.CHANTALAT,O.DIDEBERG
2001_02_07	1f32	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE INHIBITOR	MOLECULE: MAJOR PEPSIN INHIBITOR PI-3; CHAIN: A; ENGINEERED: YES	ASCARIS SUUM; PIG ROUNDWORM;	K.K.NG,J.F.PETERSEN,M.M.CHERNEY,C.GAREN,M.N.JAMES
2001_02_07	1fgu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION	MOLECULE: REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT; CHAIN: A, B; FRAGMENT: CENTRAL DOMAIN; SYNONYM: SINGLE-STRANDED DNA-BINDING PROTEIN, REPLICATION FACTOR-A PROTEIN 1,RF-A, RP-A; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	E.BOCHKAREVA,V.BELEGU,S.KOROLEV,A.BOCHKAREV
2001_02_07	1fiu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE/DNA	MOLECULE: TYPE II RESTRICTION ENZYME NGOMI; CHAIN: A, B, C, D; SYNONYM: NGOMIV RESTRICTION ENDONUCLEASE, ENDONUCLEASE NGOMI, R.NGOMI; EC: 3.1.21.4; ENGINEERED: YES; MOLECULE: DNA (5'-D(TPGPCPG)-3'); CHAIN: E, F, G, H; ENGINEERED: YES; MOLECULE: DNA (5'-D(PCPCPGPGPCPGP*C)-3'); CHAIN: I, J, K, L; ENGINEERED: YES	NEISSERIA GONORRHOEAE; BACTERIA; SYNTHETIC: YES; SYNTHETIC: YES	M.DEIBERT,S.GRAZULIS,G.SASNAUSKAS,V.SIKSNYS,R.HUBER
2001_02_07	1gcu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: BILIVERDIN REDUCTASE A; CHAIN: A; EC: 1.3.1.24; ENGINEERED: YES	RATTUS NORVEGICUS; RAT;	A.KIKUCHI,S.Y.PARK,Y.SHIRO
2001_02_07	1hqm	E	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: DNA-DIRECTED RNA POLYMERASE; CHAIN: A, B; FRAGMENT: ALPHA SUBUNIT; EC: 2.7.7.6; MOLECULE: DNA-DIRECTED RNA POLYMERASE; CHAIN: C; FRAGMENT: BETA SUBUNIT; EC: 2.7.7.6; MOLECULE: DNA-DIRECTED RNA POLYMERASE; CHAIN: D; FRAGMENT: BETA-PRIME SUBUNIT; EC: 2.7.7.6; MOLECULE: DNA-DIRECTED RNA POLYMERASE; CHAIN: E; FRAGMENT: OMEGA SUBUNIT; EC: 2.7.7.6	THERMUS AQUATICUS; BACTERIA; THERMUS AQUATICUS; BACTERIA; THERMUS AQUATICUS; BACTERIA; THERMUS AQUATICUS; BACTERIA	L.MINAKHIN,S.BHAGAT,A.BRUNNING,E.A.CAMPBELL,S.A.DARST, R.H.EBRIGHT,K.SEVERINOV

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field