EVA: Detailed information for proteins added on: 2001_01_13

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2001_01_13	1dqe	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSPORT PROTEIN	MOLECULE: PHEROMONE-BINDING PROTEIN; CHAIN: A, B; SYNONYM: PBP; ENGINEERED: YES	BOMBYX MORI; SILKWORM MOTH;	B.H.SANDLER,L.NIKONOVA,W.S.LEAL,J.CLARDY
2001_01_13	1f9a	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: HYPOTHETICAL PROTEIN MJ0541; CHAIN: A, B, C, D, E, F; FRAGMENT: NMN ADENYLYLTRANSFERASE; ENGINEERED: YES	METHANOCOCCUS JANNASCHII; ARCHAEA;	I.D'ANGELO,N.RAFFAELLI,V.DABUSTI,T.LORENZI,G.MAGNI,M.RIZZI
2001_01_13	1fy2	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ASPARTYL DIPEPTIDASE; CHAIN: A; EC: 3.4.-.-; ENGINEERED: YES	SALMONELLA TYPHIMURIUM; BACTERIA;	K.HAKANSSON,A.H.-J.WANG,C.G.MILLER
2001_01_13	1g1i	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: NON-STRUCTURAL GLYCOPROTEIN NSP4; CHAIN: A, B; FRAGMENT: OLIGOMERIZATION DOMAIN; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE IS DERIVED FROM NSP4 FROM SIMIAN 11 ROTAVIRUS (STRAIN SA11).	G.D.BOWMAN,I.M.NODELMAN,C.E.SCHUTT
2001_01_13	1g73	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	APOPTOSIS/APOPTOSIS INHIBITOR	MOLECULE: SECOND MITOCHONDRIA-DERIVED ACTIVATOR OF CASPASES; CHAIN: A, B; FRAGMENT: RESIDUES 1-162; SYNONYM: SMAC/DIABLO; ENGINEERED: YES; MUTATION: YES; MOLECULE: INHIBITORS OF APOPTOSIS-LIKE PROTEIN ILP; CHAIN: C, D; FRAGMENT: BIR3 DOMAIN (RESIDUES 238-358); SYNONYM: IAP-LIKE PROTEIN ILP; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: SMAC; HOMO SAPIENS; HUMAN;	G.WU,J.CHAI,T.L.SUBER,J.-W.WU,Y.SHI

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field