EVA: Detailed information for proteins added on: 2000_12_13

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_12_13	1dkc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIFUNGAL PROTEIN	MOLECULE: ANTIFUNGAL PEPTIDE; CHAIN: A; SYNONYM: PAFP-S	PHYTOLACCA AMERICANA; POKEWEED; OTHER_DETAILS: SEED	D.WANG,G.GAO,F.SHAO,J.DAI,J.WANG
2000_12_13	1dl5	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE; CHAIN: A, B; EC: 2.1.1.77; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA;	M.M.SKINNER,J.M.PUVATHINGAL,R.L.WALTER,A.M.FRIEDMAN
2000_12_13	1ekt	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: TRANSCRIPTION STATE REGULATORY PROTEIN ABRB; CHAIN: A, B; FRAGMENT: N-TERMINAL DIMER FROM RESIDUES 1-53 (OF 94); ENGINEERED: YES	BACILLUS SUBTILIS; BACTERIA; GENE: ABRB;	J.L.VAUGHN,V.A.FEHER,S.NAYLOR,M.A.STRAUCH,J.CAVANAGH
2000_12_13	1ewn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE/DNA	MOLECULE: 3-METHYL-ADENINE DNA GLYCOSYLASE; CHAIN: A; FRAGMENT: E125Q; SYNONYM: ALKYLADENINE DNA GLYCOSYLASE, AAG; EC: 3.2.2.21; ENGINEERED: YES; MOLECULE: DNA (5'-D(GPAPCPAPTPGP(EDA) PTPTPGPCPC)-3'); CHAIN: D; ENGINEERED: YES; OTHER_DETAILS: 1,N6-ETHENOADENINE-DNA; MOLECULE: DNA (5'-D(PGPCPAPAPTPCPAPTPGPTPCPA)- 3'); CHAIN: E; ENGINEERED: YES	HOMO SAPIENS; HUMAN; SYNTHETIC: YES; SYNTHETIC: YES	A.Y.LAU,M.D.WYATT,B.J.GLASSNER,L.D.SAMSON,T.ELLENBERGER
2000_12_13	1f6d	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; CHAIN: A, B, C, D; SYNONYM: UDP-GLCNAC-2-EPIMERASE, BACTERIOPHAGE N4 ADSORPTION PROTEIN C; EC: 5.1.3.14; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	R.E.CAMPBELL,S.C.MOSIMANN,M.E.TANNER,N.C.J.STRYNADKA
2000_12_13	1fpo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: CHAPERONE PROTEIN HSCB; CHAIN: A, B, C; SYNONYM: HSC20; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA;	J.R.CUPP-VICKERY,L.E.VICKERY
2000_12_13	1fu1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	MOLECULE: DNA REPAIR PROTEIN XRCC4; CHAIN: A, B; FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-203; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN; TISSUE: NON-TISSUE SPECIFIC;	M.JUNOP,M.MODESTI,A.GUARNE,M.GELLERT,W.YANG
2000_12_13	1g6g	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: PROTEIN KINASE RAD53; CHAIN: A, B; FRAGMENT: N-TERMINAL DOMAIN (INCLUDING FHA DOMAIN); EC: 2.7.1.-; ENGINEERED: YES; MOLECULE: SER-LEU-GLU-VAL-TPO-GLU-ALA-ASPALA-THR-PHE-ALA- LYS; CHAIN: E, F; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: RAD53; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED.	D.DUROCHER,I.A.TAYLOR
2000_12_13	1g8k	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: ARSENITE OXIDASE; CHAIN: A, C, E, G; MOLECULE: ARSENITE OXIDASE; CHAIN: B, D, F, H	ALCALIGENES FAECALIS; BACTERIA; STRAIN: NCIB 8687; ALCALIGENES FAECALIS; BACTERIA; STRAIN: NCIB 8687	P.J.ELLIS,T.CONRADS,R.HILLE,P.KUHN
2000_12_13	1ga6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: SERINE-CARBOXYL PROTEINASE; CHAIN: A; SYNONYM: PSCP, PSEUDOMONAPEPSIN, PEPSTATIN-INSENSITIVE CARBOXYL PROTEINASE; EC: 3.4.23.37; ENGINEERED: YES; MOLECULE: FRAGMENT OF TYROSTATIN; CHAIN: I; ENGINEERED: YES	PSEUDOMONAS SP.; BACTERIA; SYNTHETIC: YES; OTHER_DETAILS: THE INHIBITOR WAS CHEMICALLY SYNTHESIZED.	A.WLODAWER,M.LI,Z.DAUTER,A.GUSTCHINA,K.UCHIDA
2000_12_13	1gak	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL ADHESION	MOLECULE: FERTILIZATION PROTEIN; CHAIN: A; SYNONYM: SP18	HALIOTIS FULGENS; ABALONE; CELL: SPERM	N.KRESGE,V.D.VACQUIER,C.D.STOUT

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field