EVA: Detailed information for proteins added on: 2000_11_29

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_11_29	1dh3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: TRANSCRIPTION FACTOR CREB; CHAIN: A, C; FRAGMENT: RESIDUES 201-255; ENGINEERED: YES; MOLECULE: DNA (5'- D(CPCPTPTPGPGPCPTPGPAPCPGPTPCPAPGPCPCPAP AP*G)-3'); CHAIN: B, D; ENGINEERED: YES	MUS MUSCULUS; MOUSE; SYNTHETIC: YES	M.A.SCHUMACHER,R.H.GOODMAN,R.G.BRENNAN
2000_11_29	1fs1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: CYCLIN A/CDK2-ASSOCIATED P19; CHAIN: A, C; FRAGMENT: RESIDUES 101-153; SYNONYM: SKP2 F-BOX; ENGINEERED: YES; MOLECULE: CYCLIN A/CDK2-ASSOCIATED P45; CHAIN: B, D; FRAGMENT: RESIDUES 1-147; SYNONYM: SKP1; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	B.A.SCHULMAN,A.C.CARRANO,P.D.JEFFREY,Z.BOWEN,E.R.E.KINNUCAN, M.S.FINNIN,S.J.ELLEDGE,J.W.HARPER,M.PAGANO,N.P.PAVLETICH
2000_11_29	1fuk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: EUKARYOTIC INITIATION FACTOR 4A; CHAIN: A; FRAGMENT: CARBOXY TERMINAL DOMAIN (RESIDUES 230-394); SYNONYM: YEAST INITIATION FACTOR 4A, EIF4A; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST;	J.M.CARUTHERS,E.R.JOHNSON,D.B.MCKAY
2000_11_29	1fy7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: ESA1 HISTONE ACETYLTRANSFERASE; CHAIN: A; FRAGMENT: ACETYLTRANSFERASE DOMAIN; SYNONYM: ESA1 HAT, ESA1 PROTEIN, ESA1P; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST;	Y.YAN,N.A.BARLEV,R.H.HALEY,S.L.BERGER,R.MARMORSTEIN
2000_11_29	1g7d	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: ENDOPLASMIC RETICULUM PROTEIN ERP29; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN; ENGINEERED: YES	RATTUS NORVEGICUS; RAT;	E.LIEPINSH,S.MKRTCHIAN,M.BARISHEV,A.SHARIPO,M.INGELMAN- SUNDBERG,G.OTTING

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field