EVA: Detailed information for proteins added on: 2000_11_22

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_11_22	1c0p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: D-AMINO ACID OXIDASE; CHAIN: A; EC: 1.4.3.3; ENGINEERED: YES	RHODOTORULA GRACILIS; YEAST;	S.UMHAU,L.POLLEGIONI,G.MOLLA,K.DIEDERICHS,W.WELTE, S.M.PILONE,S.GHISLA
2000_11_22	1dfc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: FASCIN; CHAIN: A, B; FRAGMENT: FULL-LENGTH PROTEIN; SYNONYM: ACTIN BUNDLING PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	A.A.FEDOROV,E.V.FEDOROV,S.ONO,F.MATSUMURA,S.C.ALMO
2000_11_22	1e5d	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: RUBREDOXIN:OXYGEN OXIDOREDUCTASE; CHAIN: A, B	DESULFOVIBRIO GIGAS	C.FRAZAO,G.SILVA,C.M.GOMES,P.MATIAS,R.COELHO,L.SIEKER, S.MACEDO,M.Y.LIU,S.OLIVEIRA,M.TEIXEIRA,A.V.XAVIER, C.RODRIGUES-POUSADA,M.A.CARRONDO,J.LE GALL
2000_11_22	1e96	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALLING COMPLEX	MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; CHAIN: A; SYNONYM: RAC1; ENGINEERED: YES; MUTATION: YES; MOLECULE: NEUTROPHIL CYTOSOL FACTOR 2 (NCF-2) TPR DOMAIN, RESIDUES 1-203; CHAIN: B; FRAGMENT: YES ; SYNONYM: P67PHOX;	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	K.LAPOUGE,S.J.M.SMITH,P.A.WALKER,S.J.GAMBLIN,S.J.SMERDON, K.RITTINGER
2000_11_22	1ehx	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	UNKNOWN FUNCTION	MOLECULE: SCAFFOLDIN PROTEIN; CHAIN: A; FRAGMENT: UNKNOW DOMAIN; SYNONYM: CIPC; OTHER_DETAILS: HOMOLOGOUS MODULE WITH UNKNOW FUNCTION X2	CLOSTRIDIUM CELLULOLYTICUM; BACTERIA	A.MOSBAH,A.BELAICH,O.BORNET,J.P.BELAICH,B.HENRISSAT,H.DARBON
2000_11_22	1faf	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: LARGE T ANTIGEN; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; ENGINEERED: YES	MURINE POLYOMAVIRUS; VIRUS;	M.V.BERJANSKII,M.I.RILEY,A.XIE,V.SEMENCHENKO,W.R.FOLK, S.R.VAN DOREN
2000_11_22	1fp3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: N-ACYL-D-GLUCOSAMINE 2-EPIMERASE; CHAIN: A, B; EC: 5.1.3.8; ENGINEERED: YES	SUS SCROFA; PIG; TISSUE: KIDNEY;	T.ITOH,B.MIKAMI,I.MARU,Y.OHTA,W.HASHIMOTO,K.MURATA
2000_11_22	1fsi	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: CYCLIC PHOSPHODIESTERASE; CHAIN: A, B, C; ENGINEERED: YES	ARABIDOPSIS THALIANA; THALE CRESS;	A.HOFMANN,A.ZDANOV,P.GENSCHIK,W.FILIPOWICZ,S.RUVINOV, A.WLODAWER
2000_11_22	1fvi	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: CHLORELLA VIRUS DNA LIGASE-ADENYLATE; CHAIN: A; EC: 6.5.1.-; ENGINEERED: YES; MUTATION: YES	CHLORELLA VIRUS;	M.ODELL,V.SRISKANDA,S.SHUMAN,D.B.NIKOLOV
2000_11_22	1fyx	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: TOLL-LIKE RECEPTOR 2; CHAIN: A; FRAGMENT: TIR DOMAIN; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN;	Y.XU,X.TAO,B.SHEN,T.HORNG,R.MEDZHITOV,J.L.MANLEY,L.TONG
2000_11_22	1g5t	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: COB(I)ALAMIN ADENOSYLTRANSFERASE; CHAIN: A; SYNONYM: CORRINOID ADENOSYLTRANSFERASE; EC: 2.5.1.17; ENGINEERED: YES	SALMONELLA TYPHIMURIUM; BACTERIA; GENE: COBA;	I.RAYMENT,J.C.ESCALANTE-SEMERENA,C.B.BAUER
2000_11_22	1g61	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: TRANSLATION INITIATION FACTOR 6; CHAIN: A, B; SYNONYM: EIF-6; ENGINEERED: YES	METHANOCOCCUS JANNASCHII; ARCHAEA; GENE: MJ0048;	C.M.GROFT,R.BECKMANN,A.SALI,S.K.BURLEY

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field