EVA: Detailed information for proteins added on: 2000_11_15

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_11_15	1by6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: APOLIPOPROTEIN C-II; CHAIN: A; FRAGMENT: RESIDUES 44-79; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE NATURALLY OCCURS IN HUMANS (HOMO SAPIENS). SYNTHESISED ON AN ABI 430A SYNTHESISER (PE APPLIED BIOSYSTEMS, FOSTER CITY, CA, USA) BY THE SOLID PHASE METHOD USING T-BOC/BENZYL PROTECTING GROUPS AND A PHENYL-ACETAMIDOMETHYL- POLYSTYRENE SUPPORT WITH FAST HBTU/HOBT COUPLING. AFTER SYNTHESIS THE PEPTIDE WAS DEPROTECTED AND CLEAVED FROM THE RESIN WITH TMSBR.	R.STORJOHANN,A.ROZEK,J.T.SPARROW,R.J.CUSHLEY
2000_11_15	1dd3	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBOSOME	MOLECULE: 50S RIBOSOMAL PROTEIN L7/L12; CHAIN: A, B; MOLECULE: 50S RIBOSOMAL PROTEIN L7/L12; CHAIN: C, D	THERMOTOGA MARITIMA; BACTERIA; THERMOTOGA MARITIMA; BACTERIA	M.C.WAHL,G.P.BOURENKOV,H.D.BARTUNIK,R.HUBER
2000_11_15	1dk4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: INOSITOL MONOPHOSPHATASE; CHAIN: A, B; EC: 3.1.3.25; ENGINEERED: YES	METHANOCOCCUS JANNASCHII;	B.STEC,H.YANG,K.A.JOHNSON,L.CHEN,M.F.ROBERTS
2000_11_15	1dpu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: REPLICATION PROTEIN A (RPA32) C-TERMINAL DOMAIN; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 172-270); ENGINEERED: YES; MOLECULE: URACIL DNA GLYCOSYLASE (UNG2); CHAIN: B; FRAGMENT: RESIDUES 73-88; ENGINEERED: YES; OTHER_DETAILS: CHEMICALLY SYNTHESIZED	HOMO SAPIENS; HUMAN; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE SEQUENCE IS FOUND IN THE NUCLEAR [UNG2(73-88)] AND MITOCHONDRIAL [UNG1(64-79)] FORMS OF HUMAN URACIL-DNA GLYCOSYLASE	G.MER,A.M.EDWARDS,W.J.CHAZIN
2000_11_15	1e5k	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MOLYBDOPTERIN NUCLEOTIDYL-TRANSFERASE	MOLECULE: MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A; CHAIN: A; SYNONYM: MOBA, PROTEIN FA; ENGINEERED: YES; OTHER_DETAILS: THE WILD-TYPE CONSTRUCT WAS C-TERMINALLY EXTENDED WITH A 7-RESIDUE NICKEL AFFINITY TAG OF SEQUENCE SER-HIS-HIS-HIS-HIS-HIS-HIS.	ESCHERICHIA COLI; STRAIN: K12; CELLULAR_LOCATION: CYTOPLASM; GENE: MOBA;	C.E.M.STEVENSON,F.SARGENT,G.BUCHANAN,T.PALMER,D.M.LAWSON
2000_11_15	1eij	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: HYPOTHETICAL PROTEIN MTH1615; CHAIN: A; OTHER_DETAILS: HOMOLOGOUS TO HUMAN APOPTOSIS PROTEIN TFAR19	METHANOBACTERIUM THERMOAUTOTROPHICUM	D.CHRISTENDAT,V.BOOTH,M.GERNSTEIN,C.H.ARROWSMITH,A.M.EDWARDS
2000_11_15	1eq2	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: ADP-L-GLYCERO-D-MANNOHEPTOSE 6-EPIMERASE; CHAIN: A, B, C, D, E, F, G, H, I, J; EC: 5.1.3.20; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	A.M.DEACON,Y.S.NI,W.G.COLEMAN JR.,S.E.EALICK
2000_11_15	1eyb	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: HOMOGENTISATE 1,2-DIOXYGENASE; CHAIN: A; EC: 1.13.11.5; ENGINEERED: YES	HOMO SAPIENS; HUMAN; TISSUE: LIVER;	D.E.TIMM,G.P.TITUS,M.A.PENALVA,H.A.MUELLER,S.M.DE CORDOBA
2000_11_15	1f5m	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: GAF; CHAIN: A, B; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST;	Y.S.HO,L.M.BURDEN,J.H.HURLEY
2000_11_15	1f6v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: DNA TRANSPOSITION PROTEIN; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN; SYNONYM: MU B TRANSPOSITION PROTEIN; ENGINEERED: YES	BACTERIOPHAGE MU; BACTERIOPHAGE;	L-H HUNG,G.CHACONAS,G.S.SHAW
2000_11_15	1fc3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: SPO0A; CHAIN: A, B, C; FRAGMENT: C-TERMINAL DOMAIN; SYNONYM: SPORULATION RESPONSE REGULATOR; ENGINEERED: YES	BACILLUS STEAROTHERMOPHILUS; BACTERIA;	R.J.LEWIS,S.KRZYWDA,A.J.WILKINSON
2000_11_15	1ff9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: SACCHAROPINE REDUCTASE; CHAIN: A; EC: 1.5.1.7; ENGINEERED: YES	MAGNAPORTHE GRISEA; RICE BLAST FUNGUS;	E.JOHANSSON,J.J.STEFFENS,Y.LINDQVIST,G.SCHNEIDER
2000_11_15	1fo1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: NUCLEAR RNA EXPORT FACTOR 1; CHAIN: A, B; FRAGMENT: RNA-BINDING DOMAIN; SYNONYM: TAP (NFX1); ENGINEERED: YES	HOMO SAPIENS; HUMAN;	E.LIKER,E.FERNANDEZ,E.IZAURRALDE,E.CONTI
2000_11_15	1fvg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: PEPTIDE METHIONINE SULFOXIDE REDUCTASE; CHAIN: A; EC: 1.8.4.6; ENGINEERED: YES; OTHER_DETAILS: DITHIOTHREITOL COMPLEX	BOS TAURUS; BOVINE;	W.T.LOWTHER,N.BROT,H.WEISSBACH,B.W.MATTHEWS
2000_11_15	1qoj	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA EXCISION REPAIR	MOLECULE: UVRB; CHAIN: A, B; FRAGMENT: C-TERMINAL DOMAIN	ESCHERICHIA COLI; STRAIN: PP3398	M.SOHI,A.ALEXANDROVICH,G.MOOLENAAR,R.VISSE,N.GOOSEN, X.VERNEDE,J.FONTECILLA-CAMPS,J.CHAMPNESS,M.R.SANDERSON

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field