EVA: Detailed information for proteins added on: 2000_11_08

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_11_08	1e0f	I	pdb_ascii	dssp	fasta	psi_ascii	psi_html	COAGULATION/CRYSTAL STRUCTURE/HEPARIN-B	MOLECULE: THROMBIN; CHAIN: A, B, C; MOLECULE: THROMBIN; CHAIN: E, D, F; FRAGMENT: NO; SYNONYM: FACTOR IIA; EC: 3.4.21.5; MOLECULE: HAEMADIN; CHAIN: J, I, K; FRAGMENT: NO; ENGINEERED: YES	HOMO SAPIENS; MAN; TISSUE: BLOOD; OTHER_DETAILS: HUMAN THROMBIN WAS PURIFIED FROM HUMAN SERUM ACCORDING TO REPORTED PROTOCOLS; HOMO SAPIENS; MAN; TISSUE: BLOOD; OTHER_DETAILS: HUMAN THROMBIN WAS PURIFIED FROM HUMAN SERUM ACCORDING TO REPORTED PROTOCOLS; HAEMADIPSA SYLVESTRIS; OTHER_DETAILS: RECOMBINANTLY EXPRESSED IN E. COLI AS A MALTOSE BINDING PROTEIN CONJUGATE	J.RICHARDSON,B.KROEGER,W.HOEFKEN,P.PEREIRA,R.HUBER,W.BODE, P.FUENTES-PRIOR
2000_11_08	1e79	I	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ATP PHOSPHORYLASE	MOLECULE: ATP SYNTHASE ALPHA CHAIN HEART ISOFORM; CHAIN: A, B, C; SYNONYM: BOVINE MITOCHONDRIAL F1-ATPASE; EC: 3.6.1.34; MOLECULE: ATP SYNTHASE BETA CHAIN; CHAIN: D, E, F; SYNONYM: BOVINE MITOCHONDRIAL F1-ATPASE; EC: 3.6.1.34; MOLECULE: ATP SYNTHASE GAMMA CHAIN; CHAIN: G; SYNONYM: BOVINE MITOCHONDRIAL F1-ATPASE; EC: 3.6.1.34; MOLECULE: ATP SYNTHASE DELTA CHAIN; CHAIN: H; SYNONYM: BOVINE MITOCHONDRIAL F1-ATPASE; EC: 3.6.1.34; MOLECULE: ATP SYNTHASE EPSILON CHAIN; CHAIN: I; SYNONYM: BOVINE MITOCHONDRIAL F1-ATPASE; EC: 3.6.1.34	BOS TAURUS; BOVINE; ORGAN: HEART; TISSUE: MUSCLE; ORGANELLE: MITOCHONDRION; BOS TAURUS; BOVINE; ORGAN: HEART; TISSUE: MUSCLE; ORGANELLE: MITOCHONDRION; BOS TAURUS; BOVINE; ORGAN: HEART; TISSUE: MUSCLE; ORGANELLE: MITOCHONDRION; BOS TAURUS; BOVINE; ORGAN: HEART; TISSUE: MUSCLE; ORGANELLE: MITOCHONDRION; BOS TAURUS; BOVINE; ORGAN: HEART; TISSUE: MUSCLE; ORGANELLE: MITOCHONDRION	C.GIBBONS,M.G.MONTGOMERY,A.G.W.LESLIE,J.E.WALKER
2000_11_08	1g2i	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PROTEASE I; CHAIN: A, B, C; EC: 3.2.-.-; ENGINEERED: YES	PYROCOCCUS HORIKOSHII; ARCHAEA; GENE: PH1704;	X.DU,I-G.CHOI,R.KIM,J.JANCARIK,S-H.KIM

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field