EVA: Detailed information for proteins added on: 2000_11_01

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_11_01	1ev0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: MINE; CHAIN: A, B; FRAGMENT: MINE TOPOLOGICAL SPECIFICITY DOMAIN; SYNONYM: CELL DIVISION TOPOLOGICAL SPECIFICITY FACTOR; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	G.F.KING,M.W.MACIEJEWSKI,B.PAN,G.P.MULLEN
2000_11_01	1f2n	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: CAPSID PROTEIN; CHAIN: A, B, C; OTHER_DETAILS: COLLECTED FROM RICE FIELD IN THE IVORY COAST AND WAS PROPAGATED UNDER CONTAINED CONDITIONS IN A SUSCEPTIBLE RICE VARIETY IR8 (ORYZA SATIVA L.)	RICE YELLOW MOTTLE VIRUS; VIRUS	C.QU,L.LILJAS,N.OPALKA,C.BRUGIDOU,M.YEAGER,R.N.BEACHY, C.M.FAUQUET,J.E.JOHNSON,T.LIN
2000_11_01	1fd3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: BETA-DEFENSIN 2; CHAIN: A, B, C, D; SYNONYM: HBD-2, SKIN-ANTIMICROBIAL PEPTIDE 1; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS)	D.M.HOOVER,J.LUBKOWSKI
2000_11_01	1fi2	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: OXALATE OXIDASE; CHAIN: A; SYNONYM: GERMIN; EC: 1.2.3.4	HORDEUM VULGARE; BARLEY	E.J.WOO,J.M.DUNWELL,P.W.GOODENOUGH,A.C.MARVIER, R.W.PICKERSGILL
2000_11_01	1fx8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: GLYCEROL UPTAKE FACILITATOR PROTEIN; CHAIN: A; SYNONYM: GLPF; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	D.FU,A.LIBSON,L.J.W.MIERCKE,C.WEITZMAN,P.NOLLERT,R.M.STROUD
2000_11_01	1g1p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: CONOTOXIN EVIA; CHAIN: A; ENGINEERED: YES; OTHER_DETAILS: THIS STRUCTURE IS IN EQUILIBRIUM WITH THE LEU12-PRO13 CIS ISOMER (1G1Z).	SYNTHETIC: YES; OTHER_DETAILS: THE SOLID PHASE SYNTHESIS OF CONOTOXIN EVIA WAS CARRIED OUT USING THE F-MOC CHEMISTRY. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN CONUS ERMINEUS (ATLANTIC FISH-HUNTING CONE).	L.VOLPON,H.LAMTHANH,F.LE GALL,A.MENEZ,J.M.LANCELIN
2000_11_01	1g25	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; SYNONYM: RING FINGER PROTEIN MAT1; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: MAT1;	V.GERVAIS,E.WASIELEWSKI,D.BUSSO,A.POTERSZMAN,J.M.EGLY, J.C.THIERRY,B.KIEFFER

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field