EVA: Detailed information for proteins added on: 2000_10_28

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

 

date id chains PDB ASCII DSSP ASCII FASTA ASCII PSI-Blast ASCII PSI-Blast HTMLDSSP headerDSSP compndDSSP sourceDSSP author
2000_10_281d6m Apdb_asciidssp fasta psi_asciipsi_html ISOMERASEMOLECULE: DNA TOPOISOMERASE III; CHAIN: A; EC: 5.99.1.2; ENGINEERED: YESESCHERICHIA COLI; BACTERIA;A.MONDRAGON,R.DIGATE
2000_10_281d7b Apdb_asciidssp fasta psi_asciipsi_html OXIDOREDUCTASEMOLECULE: CELLOBIOSE DEHYDROGENASE; CHAIN: A, B; FRAGMENT: CYTOCHROME TYPE B DOMAIN; SYNONYM: CELLOBIOSE OXIDASE; EC: 1.1.3.25PHANEROCHAETE CHRYSOSPORIUM; FUNGUS; TISSUE: SECRETEDB.M.HALLBERG,T.BERGFORS,K.BACKBRO,C.DIVNE
2000_10_281dl6 Apdb_asciidssp fasta psi_asciipsi_html GENE REGULATIONMOLECULE: TRANSCRIPTION FACTOR II B (TFIIB); CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; ENGINEERED: YESHOMO SAPIENS; HUMAN;H.-T.CHEN,P.LEGAULT,J.GLUSHKA,J.G.OMICHINSKI,R.A.SCOTT
2000_10_281e4f Tpdb_asciidssp fasta psi_asciipsi_html BACTERIAL CELL DIVISIONMOLECULE: CELL DIVISION PROTEIN FTSA; CHAIN: T; ENGINEERED: YESTHERMOTOGA MARITIMA; DSM: 3109; PLASMID: PFE29; GENE: FTSA;F.VAN DEN ENT,J.LOWE
2000_10_281e68 Apdb_asciidssp fasta psi_asciipsi_html BACTERIOCINSMOLECULE: BACTERIOCIN AS-48; CHAIN: A; FRAGMENT: BACTERIOCIN AS-48 RESIDUE 36-105; OTHER_DETAILS: PEPTIDE LINK BETWEEN RESIDUES 1 AND 70ENTEROCOCCUS FAECALIS; PLASMID: PMB2C.GONZALEZ,G.LANGDON,M.BRUIX,A.GALVEZ,E.VALDIVIA, M.MAQUEDA,M.RICO
2000_10_281eg2 Apdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: MODIFICATION METHYLASE RSRI; CHAIN: A; SYNONYM: ADENINE-SPECIFIC METHYLTRANSFERASE RSRI, M.RSRI; EC: 2.1.1.72; ENGINEERED: YESRHODOBACTER SPHAEROIDES; BACTERIA;R.D.SCAVETTA,C.B.THOMAS,M.WALSH,S.SZEGEDI,A.JOACHIMIAK, R.I.GUMPORT,M.E.A.CHURCHILL
2000_10_281ev7 Apdb_asciidssp fasta psi_asciipsi_html HYDROLASEMOLECULE: TYPE IIE RESTRICTION ENDONUCLEASE NAEI; CHAIN: A, B; EC: 3.1.21.4; ENGINEERED: YESNOCARDIA AEROCOLONIGENES; BACTERIA;Q.HUAI,J.D.COLANDENE,Y.CHEN,F.LUO,Y.ZHAO
2000_10_281ewq Apdb_asciidssp fasta psi_asciipsi_html REPLICATION/DNAMOLECULE: DNA MISMATCH REPAIR PROTEIN MUTS; CHAIN: A, B; SYNONYM: TAQ MUTS SUBUNIT A; ENGINEERED: YES; MOLECULE: DNA (5'- D(*GP*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*TP *CP*GP*TP*C)-3'); CHAIN: C; ENGINEERED: YES; MOLECULE: DNA (5'- D(*GP*GP*AP*CP*GP*AP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*GP *TP*CP*G)-3'); CHAIN: D; ENGINEERED: YESTHERMUS AQUATICUS; BACTERIA; SYNTHETIC: YES; SYNTHETIC: YESG.OBMOLOVA,C.BAN,P.HSIEH,W.YANG
2000_10_281ezf Apdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE; CHAIN: A, B, C; FRAGMENT: RESIDUES 31-370; SYNONYM: SQUALENE SYNTHETASE; EC: 2.5.1.21; ENGINEERED: YES; MUTATION: YESHOMO SAPIENS; HUMAN;J.PANDIT,D.E.DANLEY,G.K.SCHULTE,S.M.MAZZALUPO,T.A.PAULY, C.M.HAYWARD,E.S.HAMANAKA,J.F.THOMPSON,H.J.HARWOOD
2000_10_281f81 Apdb_asciidssp fasta psi_asciipsi_html TRANSCRIPTIONMOLECULE: CREB-BINDING PROTEIN; CHAIN: A; FRAGMENT: TAZ2 DOMAIN (1764-1850); ENGINEERED: YESMUS MUSCULUS; RABBIT;R.N.DE GUZMAN,H.L.LIU,M.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT
2000_10_281fft Cpdb_asciidssp fasta psi_asciipsi_html OXIDOREDUCTASEMOLECULE: UBIQUINOL OXIDASE; CHAIN: A, F; EC: 1.10.3.-; ENGINEERED: YES; MOLECULE: UBIQUINOL OXIDASE; CHAIN: B, G; EC: 1.10.3.-; ENGINEERED: YES; MOLECULE: UBIQUINOL OXIDASE; CHAIN: C, H; EC: 1.10.3.-; ENGINEERED: YES; MOLECULE: UBIQUINOL OXIDASE; CHAIN: D, I; EC: 1.10.3.-; ENGINEERED: YESESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA;J.ABRAMSON,S.RIISTAMA,G.LARSSON,A.JASAITIS,M.SVENSSON-EK, A.PUUSTINEN,S.IWATA,M.WIKSTROM
2000_10_281fqy Apdb_asciidssp fasta psi_asciipsi_html MEMBRANE PROTEINMOLECULE: AQUAPORIN-1; CHAIN: A; SYNONYM: AQP1HOMO SAPIENS; HUMAN; CELL: ERYTHROCYTEK.MURATA,K.MITSUOKA,T.HIRAI,T.WALZ,P.AGRE,J.B.HEYMANN, A.ENGEL,Y.FUJIYOSHI
2000_10_281fxj Apdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; CHAIN: A, B; FRAGMENT: TRUNCATED FORM AFTER ARG331; SYNONYM: N-ACETYLGLUCOSAMINE 1-PHOSPHATE URIDYLTRANSFERASE; EC: 2.7.7.23; ENGINEERED: YESESCHERICHIA COLI; BACTERIA; CELLULAR_LOCATION: CYTOPLASM;K.BROWN,F.POMPEO,S.DIXON,D.MENGIN-LECREULX,C.CAMBILLAU, Y.BOURNE
2000_10_281qmu Apdb_asciidssp fasta psi_asciipsi_html CARBOXYPEPTIDASEMOLECULE: CARBOXYPEPTIDASE GP180 RESIDUES 503-882; CHAIN: A; FRAGMENT: YES; ENGINEERED: YESLOPHONETTA SPECULARIOIDES; CRESTED DUCK; ORGAN: LIVER; OTHER_DETAILS: OBTAINED AFTER CLONING INTO ANDF.X.GOMIS-RUETH,M.COLL,F.X.AVILES,J.VENDRELL,L.D.FRICKER
2000_10_281qmy Apdb_asciidssp fasta psi_asciipsi_html HYDROLASEMOLECULE: PROTEASE; SYNONYM: LEADER PROTEASE; CHAIN: A, B, C; ENGINEERED: YES; MUTATION: YESAPHTHOVIRUS O; FOOT-AND-MOUTH DISEASE VIRUS, FMDV; STRAIN: O1K;A.GUARNE,J.TORMO,W.GLASER,T.SKERN,I.FITA
2000_10_281qnrApdb_asciidssp fasta psi_asciipsi_html HYDROLASEMOLECULE: ENDO-1,4-B-D-MANNANASE; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN; EC: 3.2.1.78; ENGINEERED: YESTRICHODERMA REESEI; STRAIN: ALKO4330;E.SABINI,H.SCHUBERT,G.MURSHUDOV,K.S.WILSON,M.SIIKA-AHO, M.PENTTILA

Notations used

date date of weekly update
id PDB identifier of protein
chains PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII ASCII (plain text) version of raw PDB file
DSSP ASCII ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII ASCII version of PDB sequence in FASTA format
PSI-Blast HTML gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header DSSP 'HEADER' field
DSSP compnd DSSP 'COMPND' field
DSSP source DSSP 'SOURCE' field
DSSP author DSSP 'AUTHOR' field