EVA: Detailed information for proteins added on: 2000_10_04

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_10_04	1c4r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: NEUREXIN-I BETA; CHAIN: A, B, C, D, E, F, G, H; FRAGMENT: EXTRACELLULAR DOMAIN; ENGINEERED: YES	RATTUS NORVEGICUS; RAT;	G.RUDENKO,T.NGUYEN,Y.CHELLIAH,T.C.SUDHOF,J.DEISENHOFER
2000_10_04	1ei5	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: D-AMINOPEPTIDASE; CHAIN: A; SYNONYM: DAP; EC: 3.4.11.19; ENGINEERED: YES	OCHROBACTRUM ANTHROPI; BACTERIA; STRAIN: SCRC C1-38;	C.BOMPARD-GILLES,H.REMAUT,V.VILLERET,T.PRANGE,L.FANUEL, J.JORIS,J.-M.FRERE,J.VAN BEEUMEN
2000_10_04	1fho	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: UNC-89; CHAIN: A; FRAGMENT: PLECKSTRIN HOMOLOGY (PH) DOMAIN; ENGINEERED: YES	CAENORHABDITIS ELEGANS; NEMATODE;	N.BLOMBERG,E.BARALDI,M.SATTLER,M.SARASTE,M.NILGES
2000_10_04	1fiq	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: XANTHINE OXIDASE; CHAIN: A; FRAGMENT: RESIDUES 1-219; SYNONYM: XO; EC: 1.1.3.22; MOLECULE: XANTHINE OXIDASE; CHAIN: B; FRAGMENT: RESIDUES 220-569; SYNONYM: XO; EC: 1.1.3.22; MOLECULE: XANTHINE OXIDASE; CHAIN: C; FRAGMENT: RESIDUES 570-1332; SYNONYM: XO; EC: 1.1.3.22	BOS TAURUS; BOVINE; SECRETION: MILK; BOS TAURUS; BOVINE; SECRETION: MILK; BOS TAURUS; BOVINE; SECRETION: MILK	C.ENROTH,B.T.EGER,K.OKAMOTO,T.NISHINO,T.NISHINO,E.F.PAI
2000_10_04	1fnn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: CELL DIVISION CONTROL PROTEIN 6; CHAIN: A, B; SYNONYM: CDC6P; ENGINEERED: YES	PYROBACULUM AEROPHILUM; ARCHAEBACTERIA;	J.LIU,C.L.SMITH,D.DERYCKERE,K.DEANGELIS,G.S.MARTIN, J.M.BERGER
2000_10_04	1fq0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: KDPG ALDOLASE; CHAIN: A, B, C; EC: 4.1.2.14; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	J.H.NAISMITH
2000_10_04	1fu9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: U-SHAPED TRANSCRIPTIONAL COFACTOR; CHAIN: A; FRAGMENT: NINTH ZINC-FINGER DOMAIN; ENGINEERED: YES	DROSOPHILA MELANOGASTER; FRUIT FLY;	C.K.LIEW,K.KOWALSKI,A.H.FOX,A.NEWTON,B.K.SHARPE,M.CROSSLEY, J.P.MACKAY
2000_10_04	1fwq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR; CHAIN: A; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGAN: BRAIN;	H.YU,S.L.SCHREIBER
2000_10_04	1gd2	E	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: DNA (5'-D(APGPGPTPTPAPCPGPTPAPAPCP*C) -3'); CHAIN: A, B, C, D; ENGINEERED: YES; MOLECULE: TRANSCRIPTION FACTOR PAP1; CHAIN: E, F, G, H, I, J; FRAGMENT: LEUCINE ZIPPER DOMAIN; SYNONYM: AP-1-LIKE TRANSCRIPTION FACTOR; ENGINEERED: YES	SYNTHETIC: YES; SCHIZOSACCHAROMYCES POMBE; FISSION YEAST;	Y.FUJII,T.SHIMIZU,T.TODA,M.YANAGIDA,T.HAKOSHIMA

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field