EVA: Detailed information for proteins added on: 2000_09_06

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_09_06	1deb	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: ADENOMATOUS POLYPOSIS COLI PROTEIN; CHAIN: A, B; FRAGMENT: N-TERMINAL COILED COIL DOMAIN; SYNONYM: APC PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	C.L.DAY,T.ALBER
2000_09_06	1euj	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CYTOKINE	MOLECULE: ENDOTHELIAL MONOCYTE ACTIVATING POLYPEPTIDE 2; CHAIN: A, B; SYNONYM: EMAP 2; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	Y.KIM,J.SHIN,R.LI,C.CHEONG,S.KIM
2000_09_06	1eyq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: CHALCONE-FLAVONONE ISOMERASE 1; CHAIN: A, B; SYNONYM: CHALCONE ISOMERASE 1; EC: 5.5.1.6; ENGINEERED: YES	MEDICAGO SATIVA; ALFALFA;	J.M.JEZ,M.E.BOWMAN,R.A.DIXON,J.P.NOEL
2000_09_06	1ezw	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: COENZYME F420-DEPENDENT N5,N10- METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE; CHAIN: A	METHANOPYRUS KANDLERI; ARCHAEA	S.SHIMA,E.WARKENTIN,W.GRABARSE,R.K.THAUER,U.ERMLER
2000_09_06	1f3v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	APOPTOSIS	MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; SYNONYM: TRADD, TNFR1-ASSOCIATED DEATH DOMAIN PROTEIN; ENGINEERED: YES; MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR-ASSOCIATED PROTEIN; CHAIN: B; FRAGMENT: TRAF DOMAIN; SYNONYM: TRAF2; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	Y.C.PARK,H.YE,C.HSIA,D.SEGAL,R.RICH,H.-C.LIOU,D.MYSZKA,H.WU
2000_09_06	1f6y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE; CHAIN: A, B; ENGINEERED: YES	MOORELLA THERMOACETICA; BACTERIA; STRAIN: ATCC 39073; CELLULAR_LOCATION: CYTOPLASMIC;	T.I.DOUKOV,J.SERAVALLI,J.J.STEZOWSKI,S.W.RAGSDALE
2000_09_06	1flo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE, LYASE/DNA	MOLECULE: FLP RECOMBINASE; CHAIN: A, B, C, D; FRAGMENT: FLP; SYNONYM: SITE-SPECIFIC RECOMBINASE, PROTEIN ABLE; ENGINEERED: YES; MOLECULE: SYMMETRIZED FRT DNA SITES; CHAIN: E, G, I, K; ENGINEERED: YES; OTHER_DETAILS: DNA 13-MER; MOLECULE: SYMMETRIZED FRT DNA SITES; CHAIN: F, H, J, L; ENGINEERED: YES; OTHER_DETAILS: DNA 20-MER	SACCHAROMYCES CEREVISIAE; YEAST; GENE: FLP1; SYNTHETIC: YES; SYNTHETIC: YES	Y.CHEN,U.NARENDRA,L.E.IYPE,M.M.COX,P.A.RICE

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field