EVA: Detailed information for proteins added on: 2000_07_19

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2000_07_19	1c01	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: ANTIMICROBIAL PEPTIDE 1; CHAIN: A	MACADAMIA INTEGRIFOLIA; MACADAMIA NUT; ORGAN: NUT KERNEL	A.M.MCMANUS,K.J.NIELSEN,J.P.MARCUS,S.J.HARRISON,J.L.GREEN, J.M.MANNERS,D.J.CRAIK
2000_07_19	1c0n	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: CSDB PROTEIN; CHAIN: A; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	T.FUJII,M.MAEDA,H.MIHARA,T.KURIHARA,N.ESAKI,Y.HATA
2000_07_19	1dus	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS	MOLECULE: MJ0882; CHAIN: A; ENGINEERED: YES	METHANOCOCCUS JANNASCHII; ARCHAEA;	L.W.HUNG,L.HUANG,R.KIM,S.H.KIM
2000_07_19	1dvo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: FERTILITY INHIBITION PROTEIN O; CHAIN: A; SYNONYM: FINO; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA;	A.F.GHETU,M.J.GUBBINS,L.S.FROST,J.N.M.GLOVER
2000_07_19	1evl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: THREONYL-TRNA SYNTHETASE; CHAIN: A, B, C, D; FRAGMENT: CATALYTIC AND ANTICODON BINDING DOMAINS (RESIDUES 242-642); EC: 6.1.1.3; ENGINEERED: YES; OTHER_DETAILS: TRUNCATED FORM	ESCHERICHIA COLI; BACTERIA;	R.SANKARANARAYANAN,A.C.DOCK-BREGEON,B.REES,D.MORAS
2000_07_19	1qjv	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE (ASPARTYL ESTERASE)	MOLECULE: PECTIN METHYLESTERASE; CHAIN: A, B; FRAGMENT: MATURE ENZYME (RESIDUES 25-366); SYNONYM: PECTINESTERASE; EC: 3.1.1.11; ENGINEERED: YES	ERWINIA CHRYSANTHEMI; STRAIN: B374; CELLULAR_LOCATION: EXTRACELLULAR; GENE: PEMA; UK NATIONAL COLLECTION OF PLANT PATHOGENIC BACTERIA (NCPPB)	J.JENKINS,O.MAYANS,D.SMITH,K.WORBOYS,R.PICKERSGILL
2000_07_19	1qo2	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: N-((5-PHOSPHORIBOSYL)-FORMIMINO)-5-AMINOIMIDAZOL- 4-CARBOXAMID RIBONUCLEOTID ISOMERASE; CHAIN: A, B; SYNONYM: HISA, PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE; EC: 5.3.1.15; ENGINEERED: YES; OTHER_DETAILS: M1, M17 AND M236 ARE SELENOMETHIONINE SUBSTITUTED	THERMOTOGA MARITIMA; CELLULAR_LOCATION: CYTOPLASM; PLASMID: PDS/RBSII/THISA; GENE: THISA;	M.WILMANNS,D.LANG,R.THOMA,R.STERNER
2000_07_19	1thf	D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: HISF PROTEIN; CHAIN: D; FRAGMENT: CYCLASE SUBUNIT; SYNONYM: IMIDAZOLEGLYCEROL PHOSPHATE SYNTHASE SUBUNIT; ENGINEERED: YES	THERMOTOGA MARITIMA;	D.A.LANG,M.WILMANNS

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field