| Method | Number of proteins | Average N3.5A_Gbl% for all proteins | Comments |
|---|---|---|---|
| 3D-PSSM | 484 | 16.0 | |
| BLAST | 534 | 9.2 | |
| FUGUE | 564 | 14.3 | |
| Libellula | 159 | 11.7 | |
| LOOPP | ? | ? | no longer tested |
| pdbblast | ? | ? | no longer tested |
| Prospect | 150 | 12.4 | |
| PSI-BLAST | 548 | 10.3 | |
| PSPT | ? | ? | no longer tested |
| SAMt99 | 220 | 22.4 | |
| ssearch | 537 | 11.3 | |
| Superfamily | 297 | 12.5 |