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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 625 257 method/index.html
3D-PSSM   450207method/3dpssm.html
BLAST   499219method/blast.html
FUGUE   530225method/fugue.html
Libellula   13070method/libellula.html
Prospect   13867method/prospect.html
PSI-BLAST   509223method/psiblast.html
SAMt99   208127method/samt99.html
ssearch   498217method/ssearch.html
Superfamily   278120method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11413D-PSSM8
6.7
(+/-1.4)		4
2.8
(+/-0.3)		5
0.4
(+/-2.7)		8
5.1
(+/-2.1)		24.5
(+/-7.1)		34.3
(+/-8.4)		42.7
(+/-6.1)		48.1
(+/-5.7)		80.6
(+/-3.7)
BLAST0
1.4
(+/-0.2)		0
1.8
(+/-0.2)		1
-14.3
(+/-3.6)		1
-3.5
(+/-1.7)		8.6
(+/-3.6)		12.0
(+/-4.8)		18.7
(+/-4.1)		22.5
(+/-4.3)		46.2
(+/-10.2)
FUGUE7
7.0
(+/-1.4)		5
3.5
(+/-0.3)		8
1.9
(+/-2.7)		8
6.6
(+/-2.3)		27.3
(+/-7.7)		34.4
(+/-8.7)		47.3
(+/-6.3)		51.7
(+/-6.2)		83.7
(+/-3.0)
Libellula6
6.0
(+/-1.4)		3
2.2
(+/-0.5)		4
-1.4
(+/-2.5)		8
2.1
(+/-2.4)		16.4
(+/-5.5)		26.1
(+/-7.6)		30.8
(+/-6.6)		34.8
(+/-6.9)		84.5
(+/-4.0)
Prospect9
7.1
(+/-1.5)		6
3.0
(+/-0.4)		7
2.5
(+/-3.6)		7
2.9
(+/-2.5)		17.2
(+/-5.8)		26.9
(+/-7.2)		39.7
(+/-5.8)		44.5
(+/-5.8)		78.1
(+/-5.3)
PSI-BLAST3
3.3
(+/-1.1)		2
1.8
(+/-0.4)		2
-14.3
(+/-3.8)		2
-2.6
(+/-2.5)		10.7
(+/-3.8)		16.1
(+/-5.2)		20.3
(+/-5.9)		22.9
(+/-6.1)		41.8
(+/-7.1)
SAMt996
5.6
(+/-1.4)		4
2.9
(+/-0.3)		6
2.0
(+/-4.5)		9
7.4
(+/-2.3)		29.2
(+/-7.5)		35.7
(+/-8.4)		39.2
(+/-6.8)		42.5
(+/-6.8)		56.0
(+/-6.7)
ssearch2
2.5
(+/-0.8)		1
2.2
(+/-0.4)		1
-4.8
(+/-1.6)		4
-0.2
(+/-1.4)		9.9
(+/-5.9)		14.1
(+/-7.3)		28.8
(+/-5.5)		35.6
(+/-5.6)		95.0
(+/-7.4)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 25813D-PSSM35
8.2
(+/-0.9)		16
3.1
(+/-0.2)		14
-1.8
(+/-1.4)		36
6.4
(+/-1.3)		28.9
(+/-4.0)		36.5
(+/-4.4)		42.5
(+/-3.6)		49.0
(+/-3.7)		79.4
(+/-2.3)
BLAST16
3.3
(+/-0.4)		9
2.3
(+/-0.2)		10
-9.8
(+/-1.9)		21
0.8
(+/-1.2)		17.2
(+/-3.4)		22.3
(+/-3.8)		24.6
(+/-3.1)		28.4
(+/-3.4)		40.3
(+/-3.5)
FUGUE28
7.5
(+/-1.0)		20
3.3
(+/-0.2)		14
-1.5
(+/-1.3)		34
6.8
(+/-1.4)		28.9
(+/-4.2)		36.3
(+/-4.6)		43.9
(+/-3.7)		49.1
(+/-3.7)		78.7
(+/-3.1)
PSI-BLAST14
3.7
(+/-0.6)		8
2.2
(+/-0.2)		4
-12.6
(+/-1.7)		18
-0.3
(+/-1.3)		14.7
(+/-3.1)		19.8
(+/-3.5)		24.0
(+/-3.1)		27.5
(+/-3.2)		41.8
(+/-3.4)
SAMt9933
6.8
(+/-0.8)		16
3.2
(+/-0.2)		15
-3.8
(+/-1.6)		36
6.7
(+/-1.4)		29.3
(+/-4.2)		36.0
(+/-4.6)		42.2
(+/-3.7)		46.8
(+/-4.0)		63.4
(+/-4.0)
ssearch18
4.7
(+/-0.8)		12
2.7
(+/-0.2)		11
-3.2
(+/-1.2)		22
3.0
(+/-1.3)		18.2
(+/-3.8)		23.8
(+/-4.3)		34.6
(+/-3.6)		40.2
(+/-3.8)		81.4
(+/-2.8)
Superfamily27
5.6
(+/-0.7)		14
2.8
(+/-0.2)		11
-7.7
(+/-1.9)		30
3.6
(+/-1.3)		23.6
(+/-3.8)		30.1
(+/-4.3)		34.2
(+/-3.6)		38.6
(+/-3.9)		54.5
(+/-3.9)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 312413D-PSSM72
7.5
(+/-0.6)		35
3.0
(+/-0.1)		35
-0.5
(+/-0.9)		75
5.7
(+/-0.9)		23.6
(+/-2.5)		31.6
(+/-2.8)		40.9
(+/-2.3)		47.2
(+/-2.3)		78.8
(+/-1.5)
BLAST21
2.6
(+/-0.2)		10
2.0
(+/-0.1)		18
-9.8
(+/-1.2)		31
-0.0
(+/-0.7)		12.7
(+/-2.1)		16.7
(+/-2.4)		21.4
(+/-2.0)		25.0
(+/-2.1)		40.3
(+/-2.5)
FUGUE61
6.8
(+/-0.6)		46
3.2
(+/-0.1)		36
-0.8
(+/-1.0)		69
6.4
(+/-0.9)		24.0
(+/-2.7)		30.9
(+/-3.0)		41.8
(+/-2.4)		47.2
(+/-2.4)		80.1
(+/-2.0)
PSI-BLAST33
3.9
(+/-0.4)		21
2.2
(+/-0.1)		16
-11.1
(+/-1.2)		38
0.5
(+/-0.9)		14.2
(+/-2.0)		19.1
(+/-2.3)		23.4
(+/-2.1)		26.9
(+/-2.2)		41.9
(+/-2.4)
SAMt9968
6.2
(+/-0.5)		30
3.0
(+/-0.1)		39
-1.6
(+/-1.1)		74
6.0
(+/-0.9)		25.6
(+/-2.7)		31.4
(+/-3.0)		38.8
(+/-2.5)		43.3
(+/-2.6)		61.9
(+/-2.6)
ssearch34
3.9
(+/-0.4)		22
2.5
(+/-0.1)		22
-1.9
(+/-0.8)		42
2.7
(+/-0.8)		15.6
(+/-2.5)		20.1
(+/-2.9)		31.5
(+/-2.4)		37.3
(+/-2.4)		83.0
(+/-1.9)

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