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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 649 268 method/index.html
3D-PSSM   469217method/3dpssm.html
BLAST   521230method/blast.html
FUGUE   550235method/fugue.html
Libellula   14478method/libellula.html
Prospect   14471method/prospect.html
PSI-BLAST   533234method/psiblast.html
SAMt99   216135method/samt99.html
ssearch   522228method/ssearch.html
Superfamily   297130method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11513D-PSSM8
6.3
(+/-1.4)		4
2.9
(+/-0.3)		6
0.6
(+/-2.5)		8
4.8
(+/-2.0)		22.8
(+/-6.8)		32.1
(+/-8.1)		40.2
(+/-6.2)		45.5
(+/-5.9)		80.3
(+/-3.5)
BLAST0
1.5
(+/-0.2)		0
1.9
(+/-0.2)		1
-13.8
(+/-3.4)		1
-3.2
(+/-1.6)		8.0
(+/-3.4)		11.2
(+/-4.5)		18.1
(+/-3.8)		21.8
(+/-4.1)		44.7
(+/-9.6)
FUGUE7
6.7
(+/-1.3)		5
3.5
(+/-0.3)		9
2.4
(+/-2.6)		8
6.2
(+/-2.2)		25.5
(+/-7.4)		32.1
(+/-8.4)		44.5
(+/-6.5)		48.7
(+/-6.5)		79.5
(+/-5.0)
Libellula6
5.7
(+/-1.4)		3
2.2
(+/-0.4)		5
-1.1
(+/-2.3)		8
2.0
(+/-2.2)		15.4
(+/-5.2)		24.6
(+/-7.2)		29.2
(+/-6.4)		33.1
(+/-6.7)		84.0
(+/-3.8)
Prospect9
6.7
(+/-1.5)		6
3.0
(+/-0.4)		7
1.3
(+/-3.5)		7
2.7
(+/-2.3)		16.1
(+/-5.5)		25.2
(+/-6.9)		37.3
(+/-5.9)		41.8
(+/-6.0)		73.4
(+/-6.8)
PSI-BLAST3
3.3
(+/-1.0)		2
1.9
(+/-0.4)		2
-13.9
(+/-3.5)		2
-2.5
(+/-2.3)		10.0
(+/-3.6)		15.1
(+/-5.0)		19.4
(+/-5.6)		21.9
(+/-5.7)		39.7
(+/-6.9)
SAMt996
5.3
(+/-1.3)		4
2.9
(+/-0.3)		6
1.1
(+/-4.3)		9
6.9
(+/-2.2)		27.2
(+/-7.2)		33.3
(+/-8.2)		37.0
(+/-6.7)		40.0
(+/-6.8)		53.1
(+/-6.9)
ssearch2
2.5
(+/-0.8)		2
2.3
(+/-0.3)		2
-4.3
(+/-1.6)		4
-0.1
(+/-1.3)		9.2
(+/-5.5)		13.2
(+/-6.9)		27.4
(+/-5.3)		34.0
(+/-5.4)		94.3
(+/-7.0)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 26613D-PSSM38
7.7
(+/-0.9)		17
3.1
(+/-0.2)		17
-1.6
(+/-1.3)		40
6.2
(+/-1.3)		28.6
(+/-3.8)		36.0
(+/-4.1)		42.4
(+/-3.4)		48.7
(+/-3.5)		80.3
(+/-2.1)
BLAST17
3.1
(+/-0.3)		9
2.3
(+/-0.1)		12
-9.6
(+/-1.8)		23
0.7
(+/-1.1)		17.7
(+/-3.3)		22.5
(+/-3.6)		25.4
(+/-3.0)		29.2
(+/-3.2)		41.1
(+/-3.3)
FUGUE31
7.1
(+/-0.9)		21
3.2
(+/-0.2)		17
-1.2
(+/-1.3)		38
6.8
(+/-1.3)		29.1
(+/-4.0)		36.6
(+/-4.3)		44.1
(+/-3.5)		49.2
(+/-3.5)		78.3
(+/-2.9)
PSI-BLAST15
3.5
(+/-0.6)		8
2.1
(+/-0.2)		6
-12.2
(+/-1.8)		19
-0.9
(+/-1.2)		15.5
(+/-3.1)		20.4
(+/-3.4)		24.4
(+/-3.0)		27.7
(+/-3.1)		42.4
(+/-3.3)
SAMt9937
6.5
(+/-0.7)		18
3.1
(+/-0.2)		17
-4.0
(+/-1.7)		39
6.0
(+/-1.3)		29.0
(+/-3.9)		36.0
(+/-4.3)		42.2
(+/-3.5)		46.7
(+/-3.7)		63.2
(+/-3.8)
ssearch20
4.5
(+/-0.7)		13
2.7
(+/-0.2)		14
-2.8
(+/-1.2)		25
3.1
(+/-1.2)		18.8
(+/-3.6)		24.3
(+/-4.1)		35.2
(+/-3.4)		40.9
(+/-3.5)		82.4
(+/-2.5)
Superfamily31
5.5
(+/-0.6)		16
2.8
(+/-0.2)		14
-6.7
(+/-1.9)		35
4.1
(+/-1.2)		25.2
(+/-3.7)		31.8
(+/-4.1)		35.3
(+/-3.4)		39.9
(+/-3.7)		55.3
(+/-3.7)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 313213D-PSSM75
7.3
(+/-0.5)		36
3.0
(+/-0.1)		38
-0.5
(+/-0.8)		79
5.7
(+/-0.9)		23.7
(+/-2.5)		31.6
(+/-2.8)		41.0
(+/-2.3)		47.1
(+/-2.3)		79.2
(+/-1.4)
BLAST22
2.5
(+/-0.2)		10
2.0
(+/-0.1)		20
-9.7
(+/-1.2)		33
-0.0
(+/-0.7)		13.3
(+/-2.1)		17.1
(+/-2.3)		22.0
(+/-2.0)		25.6
(+/-2.1)		40.7
(+/-2.4)
FUGUE64
6.6
(+/-0.5)		47
3.2
(+/-0.1)		39
-0.7
(+/-1.0)		73
6.4
(+/-0.9)		24.4
(+/-2.7)		31.4
(+/-2.9)		42.0
(+/-2.4)		47.3
(+/-2.4)		79.8
(+/-1.9)
PSI-BLAST34
3.7
(+/-0.4)		21
2.2
(+/-0.1)		18
-10.9
(+/-1.2)		39
0.1
(+/-0.9)		14.6
(+/-2.0)		19.4
(+/-2.3)		23.6
(+/-2.1)		27.0
(+/-2.2)		42.2
(+/-2.4)
SAMt9972
6.1
(+/-0.5)		32
3.0
(+/-0.1)		41
-1.9
(+/-1.1)		77
5.7
(+/-0.9)		25.7
(+/-2.6)		31.7
(+/-2.9)		38.9
(+/-2.4)		43.4
(+/-2.5)		61.9
(+/-2.5)
ssearch36
3.8
(+/-0.4)		23
2.5
(+/-0.1)		25
-1.8
(+/-0.8)		45
2.8
(+/-0.8)		16.1
(+/-2.5)		20.5
(+/-2.8)		32.0
(+/-2.4)		37.8
(+/-2.4)		83.4
(+/-1.8)

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