Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 633 260 method/index.html
3D-PSSM   458210method/3dpssm.html
BLAST   505222method/blast.html
FUGUE   538228method/fugue.html
Libellula   13472method/libellula.html
Prospect   14370method/prospect.html
PSI-BLAST   517226method/psiblast.html
SAMt99   210129method/samt99.html
ssearch   506220method/ssearch.html
Superfamily   285123method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11513D-PSSM8
6.3
(+/-1.4)		4
2.9
(+/-0.3)		6
0.6
(+/-2.5)		8
4.8
(+/-2.0)		22.8
(+/-6.8)		32.1
(+/-8.1)		40.2
(+/-6.2)		45.5
(+/-5.9)		80.3
(+/-3.5)
BLAST0
1.5
(+/-0.2)		0
1.9
(+/-0.2)		1
-13.8
(+/-3.4)		1
-3.2
(+/-1.6)		8.0
(+/-3.4)		11.2
(+/-4.5)		18.1
(+/-3.8)		21.8
(+/-4.1)		44.7
(+/-9.6)
FUGUE7
6.7
(+/-1.3)		5
3.5
(+/-0.3)		9
2.4
(+/-2.6)		8
6.2
(+/-2.2)		25.5
(+/-7.4)		32.1
(+/-8.4)		44.5
(+/-6.5)		48.7
(+/-6.5)		79.5
(+/-5.0)
Libellula6
5.7
(+/-1.4)		3
2.2
(+/-0.4)		5
-1.1
(+/-2.3)		8
2.0
(+/-2.2)		15.4
(+/-5.2)		24.6
(+/-7.2)		29.2
(+/-6.4)		33.1
(+/-6.7)		84.0
(+/-3.8)
Prospect9
6.7
(+/-1.5)		6
3.0
(+/-0.4)		7
1.3
(+/-3.5)		7
2.7
(+/-2.3)		16.1
(+/-5.5)		25.2
(+/-6.9)		37.3
(+/-5.9)		41.8
(+/-6.0)		73.4
(+/-6.8)
PSI-BLAST3
3.3
(+/-1.0)		2
1.9
(+/-0.4)		2
-13.9
(+/-3.5)		2
-2.5
(+/-2.3)		10.0
(+/-3.6)		15.1
(+/-5.0)		19.4
(+/-5.6)		21.9
(+/-5.7)		39.7
(+/-6.9)
SAMt996
5.3
(+/-1.3)		4
2.9
(+/-0.3)		6
1.1
(+/-4.3)		9
6.9
(+/-2.2)		27.2
(+/-7.2)		33.3
(+/-8.2)		37.0
(+/-6.7)		40.0
(+/-6.8)		53.1
(+/-6.9)
ssearch2
2.5
(+/-0.8)		2
2.3
(+/-0.3)		2
-4.3
(+/-1.6)		4
-0.1
(+/-1.3)		9.2
(+/-5.5)		13.2
(+/-6.9)		27.4
(+/-5.3)		34.0
(+/-5.4)		94.3
(+/-7.0)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 26013D-PSSM36
8.1
(+/-0.9)		16
3.1
(+/-0.2)		16
-1.5
(+/-1.4)		37
6.4
(+/-1.3)		29.4
(+/-4.0)		37.0
(+/-4.4)		42.6
(+/-3.6)		49.0
(+/-3.7)		79.7
(+/-2.2)
BLAST17
3.3
(+/-0.4)		9
2.4
(+/-0.1)		11
-9.4
(+/-1.9)		22
1.0
(+/-1.1)		18.1
(+/-3.5)		23.2
(+/-3.9)		25.4
(+/-3.2)		29.2
(+/-3.5)		41.0
(+/-3.5)
FUGUE29
7.4
(+/-1.0)		20
3.2
(+/-0.2)		16
-1.1
(+/-1.3)		35
6.8
(+/-1.3)		29.4
(+/-4.2)		36.7
(+/-4.5)		44.0
(+/-3.7)		49.1
(+/-3.7)		78.1
(+/-3.1)
PSI-BLAST15
3.7
(+/-0.6)		8
2.2
(+/-0.2)		5
-12.2
(+/-1.6)		19
-0.1
(+/-1.3)		15.6
(+/-3.2)		20.8
(+/-3.6)		24.8
(+/-3.2)		28.2
(+/-3.3)		42.2
(+/-3.5)
SAMt9934
6.7
(+/-0.7)		16
3.2
(+/-0.2)		16
-3.6
(+/-1.6)		37
6.6
(+/-1.3)		29.8
(+/-4.2)		36.4
(+/-4.6)		42.4
(+/-3.8)		46.9
(+/-4.0)		63.1
(+/-4.0)
ssearch19
4.7
(+/-0.8)		13
2.7
(+/-0.2)		13
-2.9
(+/-1.2)		23
3.1
(+/-1.2)		19.1
(+/-3.8)		24.6
(+/-4.3)		35.0
(+/-3.6)		40.6
(+/-3.7)		81.7
(+/-2.8)
Superfamily28
5.5
(+/-0.7)		14
2.8
(+/-0.2)		12
-7.4
(+/-1.9)		31
3.7
(+/-1.2)		24.2
(+/-3.9)		30.7
(+/-4.3)		34.6
(+/-3.7)		39.0
(+/-3.9)		54.7
(+/-3.9)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 312613D-PSSM73
7.4
(+/-0.6)		35
3.0
(+/-0.1)		37
-0.4
(+/-0.8)		76
5.7
(+/-0.9)		23.9
(+/-2.6)		31.9
(+/-2.8)		41.0
(+/-2.3)		47.2
(+/-2.3)		78.9
(+/-1.5)
BLAST22
2.6
(+/-0.2)		10
2.1
(+/-0.1)		19
-9.6
(+/-1.2)		32
0.1
(+/-0.7)		13.2
(+/-2.2)		17.2
(+/-2.4)		21.9
(+/-2.0)		25.4
(+/-2.2)		40.6
(+/-2.5)
FUGUE62
6.7
(+/-0.6)		46
3.2
(+/-0.1)		38
-0.6
(+/-1.0)		70
6.4
(+/-0.9)		24.4
(+/-2.7)		31.2
(+/-3.0)		41.9
(+/-2.4)		47.2
(+/-2.4)		79.8
(+/-2.0)
PSI-BLAST34
3.9
(+/-0.4)		21
2.3
(+/-0.1)		17
-10.9
(+/-1.2)		39
0.5
(+/-0.9)		14.6
(+/-2.1)		19.6
(+/-2.4)		23.8
(+/-2.2)		27.2
(+/-2.3)		42.1
(+/-2.5)
SAMt9969
6.2
(+/-0.5)		30
3.0
(+/-0.1)		40
-1.6
(+/-1.1)		75
6.0
(+/-0.9)		25.9
(+/-2.7)		31.7
(+/-3.0)		38.9
(+/-2.5)		43.4
(+/-2.6)		61.8
(+/-2.6)
ssearch35
3.9
(+/-0.4)		23
2.5
(+/-0.1)		24
-1.8
(+/-0.8)		43
2.8
(+/-0.8)		16.1
(+/-2.6)		20.5
(+/-2.9)		31.8
(+/-2.4)		37.5
(+/-2.4)		83.1
(+/-1.9)

Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top