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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 536 224 method/index.html
3D-PSSM   425198method/3dpssm.html
BLAST   17088method/blast.html
FUGUE   504216method/fugue.html
Libellula   10661method/libellula.html
Prospect   12963method/prospect.html
PSI-BLAST   17389method/psiblast.html
SAMt99   201120method/samt99.html
ssearch   16985method/ssearch.html
Superfamily   253111method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 1813D-PSSM5
8.9
(+/-2.1)		4
3.4
(+/-0.5)		3
2.9
(+/-2.8)		6
6.1
(+/-1.8)		19.4
(+/-7.3)		30.7
(+/-10.5)		39.7
(+/-7.8)		45.6
(+/-7.3)		78.5
(+/-5.9)
BLAST0
1.2
(+/-0.2)		0
1.6
(+/-0.3)		0
-16.7
(+/-5.0)		0
-1.3
(+/-0.9)		3.1
(+/-1.0)		4.6
(+/-1.3)		12.0
(+/-3.7)		14.6
(+/-4.3)		39.2
(+/-17.5)
FUGUE5
8.8
(+/-2.0)		4
4.0
(+/-0.4)		4
2.6
(+/-2.7)		6
7.9
(+/-2.3)		18.3
(+/-8.2)		26.7
(+/-11.0)		45.0
(+/-8.1)		49.4
(+/-7.9)		82.5
(+/-4.9)
Libellula5
8.8
(+/-2.0)		3
2.8
(+/-0.7)		3
2.9
(+/-2.6)		5
6.4
(+/-2.2)		19.6
(+/-8.0)		30.8
(+/-11.6)		28.7
(+/-10.1)		31.1
(+/-10.3)		86.9
(+/-5.3)
Prospect5
8.7
(+/-2.3)		4
3.7
(+/-0.5)		4
4.7
(+/-5.1)		6
6.9
(+/-2.6)		12.2
(+/-6.5)		20.8
(+/-9.0)		37.7
(+/-7.7)		41.2
(+/-8.1)		76.5
(+/-8.9)
PSI-BLAST2
4.3
(+/-1.8)		2
1.8
(+/-0.6)		1
-11.4
(+/-4.1)		2
0.9
(+/-3.0)		7.5
(+/-5.1)		11.1
(+/-7.3)		19.1
(+/-9.4)		20.8
(+/-9.7)		40.9
(+/-11.7)
SAMt995
7.7
(+/-2.1)		4
3.2
(+/-0.5)		3
4.6
(+/-6.6)		5
7.6
(+/-2.8)		24.5
(+/-7.6)		32.9
(+/-10.6)		35.3
(+/-8.6)		37.9
(+/-8.8)		51.2
(+/-10.3)
ssearch1
3.0
(+/-1.4)		1
2.8
(+/-0.4)		0
-3.7
(+/-0.8)		3
0.9
(+/-1.8)		7.9
(+/-6.5)		12.3
(+/-9.0)		25.5
(+/-6.8)		31.6
(+/-6.6)		98.5
(+/-12.8)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 23313D-PSSM18
8.0
(+/-1.3)		8
2.9
(+/-0.2)		6
-1.2
(+/-1.4)		21
6.5
(+/-1.8)		23.9
(+/-4.9)		31.1
(+/-5.6)		38.3
(+/-4.6)		45.1
(+/-4.7)		79.0
(+/-2.8)
BLAST9
3.1
(+/-0.5)		6
2.3
(+/-0.2)		5
-10.5
(+/-2.6)		11
1.0
(+/-1.5)		12.8
(+/-4.0)		17.0
(+/-4.6)		20.3
(+/-3.8)		23.8
(+/-4.2)		36.5
(+/-4.3)
FUGUE17
7.3
(+/-1.3)		11
3.1
(+/-0.3)		7
-1.5
(+/-1.7)		19
6.1
(+/-1.8)		22.2
(+/-5.0)		29.0
(+/-5.6)		38.5
(+/-4.6)		44.1
(+/-4.6)		76.4
(+/-4.1)
PSI-BLAST10
3.9
(+/-0.8)		6
2.4
(+/-0.3)		2
-10.6
(+/-1.6)		12
1.6
(+/-1.6)		13.0
(+/-4.2)		18.0
(+/-4.8)		23.5
(+/-4.0)		27.4
(+/-4.2)		42.7
(+/-4.7)
SAMt9919
6.1
(+/-0.9)		7
2.8
(+/-0.2)		6
-5.7
(+/-2.2)		17
5.4
(+/-1.8)		21.5
(+/-5.0)		27.1
(+/-5.7)		35.0
(+/-4.8)		39.5
(+/-5.1)		57.7
(+/-5.5)
ssearch11
5.2
(+/-1.3)		8
2.6
(+/-0.2)		5
-3.5
(+/-1.6)		12
2.8
(+/-1.8)		14.0
(+/-4.6)		19.6
(+/-5.2)		31.9
(+/-4.7)		37.1
(+/-4.9)		80.3
(+/-4.0)
Superfamily14
5.2
(+/-1.0)		8
2.7
(+/-0.2)		4
-9.9
(+/-2.6)		16
3.1
(+/-1.6)		17.0
(+/-4.5)		23.2
(+/-5.3)		28.5
(+/-4.6)		32.6
(+/-4.9)		49.1
(+/-5.2)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 35113D-PSSM30
8.0
(+/-1.0)		15
3.0
(+/-0.2)		13
0.6
(+/-1.2)		35
6.8
(+/-1.3)		22.8
(+/-3.7)		30.9
(+/-4.2)		40.1
(+/-3.5)		46.6
(+/-3.6)		79.5
(+/-2.2)
BLAST11
2.9
(+/-0.4)		6
2.3
(+/-0.2)		8
-9.1
(+/-1.9)		15
1.2
(+/-1.1)		12.4
(+/-3.3)		15.6
(+/-3.6)		20.8
(+/-3.1)		24.3
(+/-3.3)		39.4
(+/-4.1)
FUGUE29
7.6
(+/-1.0)		21
3.3
(+/-0.2)		16
0.5
(+/-1.4)		32
6.7
(+/-1.3)		22.0
(+/-3.9)		29.4
(+/-4.4)		41.7
(+/-3.6)		47.3
(+/-3.6)		79.2
(+/-2.9)
PSI-BLAST15
4.1
(+/-0.7)		11
2.4
(+/-0.2)		6
-9.6
(+/-1.4)		19
1.9
(+/-1.3)		13.1
(+/-3.3)		18.3
(+/-3.8)		24.9
(+/-3.5)		28.4
(+/-3.6)		45.4
(+/-4.0)
SAMt9932
6.5
(+/-0.7)		14
3.0
(+/-0.2)		15
-2.0
(+/-2.0)		30
6.4
(+/-1.3)		23.8
(+/-3.9)		30.2
(+/-4.5)		37.4
(+/-3.7)		41.8
(+/-4.0)		59.6
(+/-4.3)
ssearch17
4.8
(+/-0.9)		11
2.7
(+/-0.2)		8
-2.5
(+/-1.2)		19
2.4
(+/-1.3)		13.6
(+/-3.6)		18.9
(+/-4.2)		32.7
(+/-3.6)		38.2
(+/-3.7)		83.5
(+/-3.5)

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