Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category threading, best of first 1 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 610 247 method/index.html
3D-PSSM   417194method/3dpssm.html
BLAST   591242method/blast.html
FUGUE   496211method/fugue.html
Libellula   9957method/libellula.html
Prospect   12460method/prospect.html
PSI-BLAST   596246method/psiblast.html
SAMt99   199118method/samt99.html
ssearch   589243method/ssearch.html
Superfamily   245106method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 12613D-PSSM12
6.1
(+/-1.2)		7
2.6
(+/-0.3)		8
-0.4
(+/-1.6)		14
2.7
(+/-1.3)		13.1
(+/-3.4)		20.6
(+/-4.7)
BLAST0
1.3
(+/-0.2)		0
1.7
(+/-0.2)		1
-15.8
(+/-2.3)		2
-2.2
(+/-0.9)		3.2
(+/-0.9)		5.4
(+/-1.3)
FUGUE11
5.4
(+/-1.0)		9
3.0
(+/-0.3)		11
-2.9
(+/-2.8)		13
3.3
(+/-1.6)		12.2
(+/-3.6)		18.3
(+/-4.7)
Libellula10
5.7
(+/-1.2)		5
1.7
(+/-0.3)		7
-1.2
(+/-1.9)		12
2.6
(+/-1.4)		12.5
(+/-3.4)		19.6
(+/-4.8)
Prospect12
6.3
(+/-1.2)		9
2.8
(+/-0.3)		10
1.1
(+/-2.1)		12
3.4
(+/-1.5)		14.1
(+/-4.0)		22.6
(+/-5.0)
PSI-BLAST2
2.0
(+/-0.4)		1
1.8
(+/-0.2)		2
-12.9
(+/-2.5)		3
-1.3
(+/-1.0)		3.6
(+/-0.9)		8.1
(+/-1.7)
SAMt9911
5.5
(+/-1.0)		9
2.8
(+/-0.3)		10
0.7
(+/-2.7)		12
4.0
(+/-1.6)		16.5
(+/-4.1)		22.7
(+/-5.1)
ssearch2
2.1
(+/-0.6)		2
1.8
(+/-0.2)		0
-5.2
(+/-1.2)		4
-1.4
(+/-1.1)		4.2
(+/-2.1)		7.6
(+/-3.1)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 25913D-PSSM35
7.8
(+/-0.9)		16
2.9
(+/-0.2)		13
-2.2
(+/-1.3)		35
4.8
(+/-1.3)		23.0
(+/-3.4)		30.6
(+/-4.0)
BLAST12
2.7
(+/-0.3)		5
2.0
(+/-0.2)		9
-10.4
(+/-2.0)		16
0.1
(+/-1.1)		14.1
(+/-3.1)		18.7
(+/-3.4)
FUGUE27
6.6
(+/-0.9)		17
2.9
(+/-0.2)		12
-2.7
(+/-1.4)		31
4.5
(+/-1.3)		21.3
(+/-3.6)		28.9
(+/-4.1)
PSI-BLAST15
3.0
(+/-0.4)		4
2.0
(+/-0.2)		4
-15.4
(+/-1.8)		14
-0.8
(+/-1.0)		12.8
(+/-2.6)		18.2
(+/-3.0)
SAMt9931
6.0
(+/-0.6)		15
2.8
(+/-0.2)		13
-4.3
(+/-1.6)		33
4.4
(+/-1.3)		22.0
(+/-3.6)		28.3
(+/-4.1)
ssearch17
4.5
(+/-0.8)		12
2.4
(+/-0.2)		7
-4.2
(+/-1.2)		18
1.9
(+/-1.3)		14.2
(+/-3.3)		19.8
(+/-3.9)
Superfamily25
5.2
(+/-0.7)		12
2.6
(+/-0.2)		10
-7.8
(+/-1.8)		29
2.7
(+/-1.2)		18.2
(+/-3.4)		25.3
(+/-4.0)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 314413D-PSSM79
6.9
(+/-0.5)		38
2.8
(+/-0.1)		39
-0.7
(+/-0.8)		82
4.7
(+/-0.8)		20.5
(+/-2.2)		28.1
(+/-2.5)
BLAST21
2.3
(+/-0.2)		7
1.9
(+/-0.1)		21
-9.8
(+/-1.2)		30
-0.1
(+/-0.6)		11.8
(+/-1.9)		15.5
(+/-2.1)
FUGUE67
6.1
(+/-0.5)		47
3.0
(+/-0.1)		42
-1.7
(+/-1.1)		76
5.1
(+/-0.8)		20.1
(+/-2.3)		26.9
(+/-2.6)
PSI-BLAST22
2.5
(+/-0.2)		6
1.9
(+/-0.1)		12
-13.6
(+/-1.2)		28
-1.0
(+/-0.6)		10.5
(+/-1.5)		14.9
(+/-1.7)
SAMt9974
5.8
(+/-0.4)		34
2.9
(+/-0.1)		45
-1.6
(+/-1.0)		79
4.9
(+/-0.8)		22.4
(+/-2.3)		28.3
(+/-2.6)
ssearch38
3.7
(+/-0.4)		23
2.3
(+/-0.1)		22
-2.2
(+/-0.7)		44
2.0
(+/-0.8)		13.5
(+/-2.2)		17.9
(+/-2.5)

Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top