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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 814 269 method/index.html
3D-PSSM   549206method/3dpssm.html
BLAST   791264method/blast.html
FUGUE   657225method/fugue.html
Libellula   8845method/libellula.html
Prospect   13152method/prospect.html
PSI-BLAST   796268method/psiblast.html
SAMt99   354155method/samt99.html
ssearch   790265method/ssearch.html
Superfamily   310104method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 12713D-PSSM18
9.3
(+/-1.5)		10
3.1
(+/-0.3)		12
3.6
(+/-1.9)		18
7.2
(+/-1.7)		22.0
(+/-4.8)		30.8
(+/-5.8)		40.3
(+/-5.0)		45.4
(+/-4.9)		76.6
(+/-3.4)
BLAST8
4.7
(+/-1.1)		6
2.5
(+/-0.3)		6
-5.7
(+/-3.0)		9
2.7
(+/-1.5)		13.0
(+/-3.9)		15.6
(+/-4.3)		22.6
(+/-4.1)		25.9
(+/-4.2)		38.5
(+/-4.5)
FUGUE17
9.7
(+/-1.5)		12
3.6
(+/-0.3)		16
2.5
(+/-2.3)		19
7.9
(+/-1.6)		20.8
(+/-4.6)		28.2
(+/-5.5)		43.0
(+/-4.9)		47.9
(+/-5.1)		74.6
(+/-5.4)
Libellula16
9.2
(+/-1.5)		8
2.6
(+/-0.4)		12
4.4
(+/-2.0)		17
7.2
(+/-1.8)		20.6
(+/-5.0)		27.5
(+/-5.8)		31.8
(+/-5.5)		36.1
(+/-5.8)		82.0
(+/-4.0)
Prospect19
9.7
(+/-1.4)		12
3.3
(+/-0.3)		14
5.0
(+/-1.9)		16
7.7
(+/-1.6)		24.2
(+/-4.9)		32.9
(+/-5.6)		42.8
(+/-4.9)		47.7
(+/-5.0)		79.8
(+/-3.4)
PSI-BLAST9
6.6
(+/-1.6)		8
2.8
(+/-0.3)		6
-3.4
(+/-2.6)		10
4.5
(+/-1.8)		16.7
(+/-4.6)		21.5
(+/-5.1)		27.2
(+/-5.2)		30.5
(+/-5.3)		45.1
(+/-6.0)
SAMt9917
9.0
(+/-1.6)		11
3.5
(+/-0.3)		14
3.8
(+/-2.5)		17
7.5
(+/-1.6)		24.4
(+/-5.2)		31.2
(+/-6.0)		37.3
(+/-5.0)		42.0
(+/-5.3)		58.1
(+/-5.4)
ssearch10
6.9
(+/-1.5)		10
2.8
(+/-0.3)		5
-1.1
(+/-1.3)		13
4.8
(+/-1.7)		14.5
(+/-4.5)		19.4
(+/-5.3)		34.0
(+/-5.1)		39.2
(+/-5.0)		82.8
(+/-3.1)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 211913D-PSSM100
12.6
(+/-0.7)		68
4.0
(+/-0.1)		43
1.5
(+/-1.0)		101
11.7
(+/-0.9)		35.9
(+/-2.4)		46.4
(+/-2.6)		54.9
(+/-2.1)		60.9
(+/-2.1)		83.2
(+/-1.4)
BLAST56
5.9
(+/-0.5)		36
3.0
(+/-0.1)		31
-3.2
(+/-1.4)		64
6.0
(+/-1.0)		24.4
(+/-2.5)		29.5
(+/-2.7)		31.9
(+/-2.4)		35.2
(+/-2.5)		45.8
(+/-2.4)
FUGUE89
11.1
(+/-0.7)		66
3.9
(+/-0.1)		39
1.1
(+/-1.0)		95
11.1
(+/-0.9)		31.0
(+/-2.6)		40.3
(+/-2.8)		51.8
(+/-2.2)		57.3
(+/-2.2)		81.3
(+/-1.8)
PSI-BLAST84
9.9
(+/-0.7)		58
3.6
(+/-0.1)		34
-3.5
(+/-1.4)		84
8.6
(+/-1.0)		31.7
(+/-2.4)		39.8
(+/-2.6)		42.8
(+/-2.4)		46.8
(+/-2.5)		58.2
(+/-2.6)
SAMt9995
11.4
(+/-0.7)		65
3.9
(+/-0.1)		43
0.6
(+/-1.2)		101
11.4
(+/-0.9)		35.2
(+/-2.6)		44.6
(+/-2.8)		52.4
(+/-2.3)		57.3
(+/-2.3)		72.7
(+/-2.3)
ssearch68
8.8
(+/-0.7)		56
3.4
(+/-0.1)		31
-0.1
(+/-1.0)		73
8.7
(+/-1.1)		26.0
(+/-2.8)		34.0
(+/-3.1)		45.6
(+/-2.6)		51.1
(+/-2.7)		81.2
(+/-1.9)
Superfamily89
10.3
(+/-0.7)		62
3.7
(+/-0.1)		40
-1.2
(+/-1.3)		92
9.6
(+/-0.9)		31.9
(+/-2.6)		40.4
(+/-2.8)		47.2
(+/-2.3)		51.8
(+/-2.4)		66.8
(+/-2.4)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 325613D-PSSM194
10.7
(+/-0.4)		128
3.6
(+/-0.1)		90
1.5
(+/-0.7)		195
9.9
(+/-0.7)		30.6
(+/-1.7)		40.6
(+/-1.9)		50.1
(+/-1.5)		55.8
(+/-1.5)		80.9
(+/-1.0)
BLAST100
5.0
(+/-0.3)		64
2.7
(+/-0.1)		62
-4.5
(+/-1.0)		111
4.4
(+/-0.6)		20.6
(+/-1.6)		24.9
(+/-1.8)		28.5
(+/-1.6)		31.7
(+/-1.6)		44.1
(+/-1.6)
FUGUE178
9.6
(+/-0.4)		131
3.7
(+/-0.1)		92
1.0
(+/-0.7)		188
9.7
(+/-0.6)		27.8
(+/-1.8)		36.2
(+/-1.9)		48.3
(+/-1.5)		53.6
(+/-1.6)		80.2
(+/-1.3)
PSI-BLAST142
8.0
(+/-0.5)		96
3.1
(+/-0.1)		66
-4.6
(+/-0.9)		148
6.6
(+/-0.7)		25.9
(+/-1.6)		32.6
(+/-1.8)		36.3
(+/-1.7)		40.1
(+/-1.7)		52.7
(+/-1.8)
SAMt99187
9.9
(+/-0.4)		123
3.7
(+/-0.1)		98
0.9
(+/-0.8)		196
9.9
(+/-0.6)		31.7
(+/-1.8)		39.9
(+/-2.0)		47.8
(+/-1.6)		52.5
(+/-1.7)		69.3
(+/-1.6)
ssearch129
7.3
(+/-0.4)		102
3.1
(+/-0.1)		67
0.0
(+/-0.6)		139
7.2
(+/-0.7)		21.9
(+/-1.8)		28.9
(+/-2.0)		41.4
(+/-1.8)		46.8
(+/-1.8)		82.4
(+/-1.2)

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