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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 814 269 method/index.html
3D-PSSM   549206method/3dpssm.html
BLAST   791264method/blast.html
FUGUE   657225method/fugue.html
Libellula   8845method/libellula.html
Prospect   13152method/prospect.html
PSI-BLAST   796268method/psiblast.html
SAMt99   354155method/samt99.html
ssearch   790265method/ssearch.html
Superfamily   310104method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 12713D-PSSM21
11.8
(+/-1.4)		16
4.0
(+/-0.2)		16
6.5
(+/-1.9)		21
10.8
(+/-1.7)		31.3
(+/-5.1)		40.8
(+/-5.7)
BLAST8
5.2
(+/-1.0)		6
2.9
(+/-0.2)		7
-1.0
(+/-2.6)		9
4.0
(+/-1.7)		14.3
(+/-3.9)		17.3
(+/-4.2)
FUGUE22
12.0
(+/-1.4)		14
4.1
(+/-0.2)		18
6.7
(+/-1.6)		22
10.4
(+/-1.5)		28.4
(+/-4.9)		37.5
(+/-5.7)
Libellula20
12.1
(+/-1.6)		13
3.6
(+/-0.3)		16
9.4
(+/-2.4)		21
10.8
(+/-1.6)		31.5
(+/-5.4)		39.9
(+/-5.9)
Prospect19
10.5
(+/-1.4)		17
4.0
(+/-0.2)		16
7.4
(+/-2.0)		21
10.1
(+/-1.5)		26.1
(+/-4.9)		34.9
(+/-5.5)
PSI-BLAST11
7.3
(+/-1.6)		9
3.3
(+/-0.3)		7
-1.2
(+/-2.5)		12
5.3
(+/-1.8)		18.6
(+/-4.8)		23.9
(+/-5.1)
SAMt9918
9.9
(+/-1.7)		13
3.7
(+/-0.3)		14
6.0
(+/-2.6)		19
8.8
(+/-1.6)		27.7
(+/-5.4)		33.7
(+/-5.9)
ssearch10
7.6
(+/-1.5)		10
3.5
(+/-0.2)		7
0.8
(+/-1.4)		16
6.5
(+/-1.7)		16.3
(+/-4.5)		22.2
(+/-5.2)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 211913D-PSSM104
13.8
(+/-0.7)		88
4.4
(+/-0.1)		53
3.5
(+/-1.1)		106
14.1
(+/-0.9)		42.9
(+/-2.3)		53.1
(+/-2.4)
BLAST63
6.7
(+/-0.5)		46
3.3
(+/-0.1)		34
-1.0
(+/-1.5)		75
8.0
(+/-1.0)		27.3
(+/-2.5)		32.0
(+/-2.7)
FUGUE99
12.7
(+/-0.7)		82
4.4
(+/-0.1)		51
3.0
(+/-1.0)		110
13.9
(+/-0.8)		38.1
(+/-2.6)		48.4
(+/-2.7)
PSI-BLAST90
10.8
(+/-0.7)		73
4.0
(+/-0.1)		40
-1.1
(+/-1.4)		91
10.4
(+/-1.0)		35.7
(+/-2.4)		43.2
(+/-2.5)
SAMt99101
12.5
(+/-0.7)		80
4.3
(+/-0.1)		52
2.9
(+/-1.2)		106
13.7
(+/-0.9)		40.6
(+/-2.6)		49.5
(+/-2.7)
ssearch79
10.0
(+/-0.7)		66
3.9
(+/-0.1)		36
1.7
(+/-1.0)		85
11.2
(+/-1.1)		29.9
(+/-2.8)		38.5
(+/-3.0)
Superfamily93
10.9
(+/-0.6)		70
4.0
(+/-0.1)		44
2.2
(+/-1.1)		97
11.5
(+/-1.0)		36.9
(+/-2.7)		44.4
(+/-2.9)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 325613D-PSSM215
12.3
(+/-0.4)		170
4.2
(+/-0.1)		120
3.9
(+/-0.7)		221
12.8
(+/-0.6)		37.3
(+/-1.7)		47.4
(+/-1.8)
BLAST114
5.8
(+/-0.3)		81
3.1
(+/-0.1)		73
-1.3
(+/-1.0)		134
6.3
(+/-0.6)		23.5
(+/-1.7)		27.8
(+/-1.8)
FUGUE210
11.5
(+/-0.4)		161
4.2
(+/-0.1)		121
3.8
(+/-0.6)		228
12.8
(+/-0.6)		34.1
(+/-1.8)		43.7
(+/-1.9)
PSI-BLAST163
9.0
(+/-0.4)		121
3.6
(+/-0.1)		83
-1.3
(+/-0.9)		171
8.6
(+/-0.7)		30.4
(+/-1.7)		36.8
(+/-1.8)
SAMt99199
10.9
(+/-0.5)		153
4.0
(+/-0.1)		110
2.9
(+/-0.8)		207
11.8
(+/-0.6)		36.4
(+/-1.8)		44.2
(+/-1.9)
ssearch147
8.4
(+/-0.4)		119
3.7
(+/-0.1)		77
1.6
(+/-0.6)		164
9.5
(+/-0.7)		25.2
(+/-1.9)		32.9
(+/-2.0)

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