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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 856 273 method/index.html
3D-PSSM   564213method/3dpssm.html
BLAST   833269method/blast.html
FUGUE   673230method/fugue.html
Libellula   9550method/libellula.html
Prospect   14560method/prospect.html
PSI-BLAST   838272method/psiblast.html
SAMt99   369165method/samt99.html
ssearch   832269method/ssearch.html
Superfamily   313105method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 13213D-PSSM22
9.8
(+/-1.3)		13
3.4
(+/-0.3)		13
2.0
(+/-1.8)		23
9.8
(+/-2.1)		29.3
(+/-5.3)		38.4
(+/-5.9)		46.1
(+/-5.0)		51.0
(+/-4.8)		79.4
(+/-3.1)
BLAST11
5.5
(+/-1.0)		8
2.8
(+/-0.3)		7
-6.6
(+/-2.7)		13
5.7
(+/-2.1)		19.6
(+/-5.0)		22.7
(+/-5.2)		28.9
(+/-4.8)		32.0
(+/-4.8)		43.8
(+/-4.7)
FUGUE21
10.0
(+/-1.3)		15
3.7
(+/-0.3)		17
1.0
(+/-2.1)		24
10.8
(+/-2.1)		28.4
(+/-5.2)		36.3
(+/-5.8)		48.4
(+/-4.8)		53.0
(+/-4.8)		77.2
(+/-4.7)
Libellula20
9.6
(+/-1.3)		10
2.5
(+/-0.4)		14
4.1
(+/-2.2)		22
9.6
(+/-2.0)		28.1
(+/-5.5)		35.3
(+/-6.0)		30.9
(+/-5.2)		34.9
(+/-5.5)		84.1
(+/-3.5)
Prospect22
9.7
(+/-1.3)		14
3.4
(+/-0.3)		15
2.6
(+/-2.0)		21
9.8
(+/-2.0)		28.6
(+/-5.2)		36.9
(+/-5.5)		46.2
(+/-4.7)		50.7
(+/-4.7)		78.7
(+/-3.4)
PSI-BLAST12
7.0
(+/-1.4)		10
3.0
(+/-0.3)		6
-4.6
(+/-2.4)		14
7.1
(+/-2.2)		23.1
(+/-5.3)		28.2
(+/-5.5)		32.5
(+/-5.3)		35.5
(+/-5.4)		49.7
(+/-5.7)
SAMt9921
9.5
(+/-1.4)		14
3.7
(+/-0.3)		15
2.1
(+/-2.3)		22
10.1
(+/-1.9)		29.7
(+/-5.3)		37.4
(+/-5.9)		43.6
(+/-5.0)		48.1
(+/-5.2)		63.8
(+/-5.2)
ssearch14
7.6
(+/-1.3)		13
3.1
(+/-0.3)		6
-2.0
(+/-1.3)		18
7.7
(+/-2.1)		22.6
(+/-5.4)		27.9
(+/-5.9)		40.6
(+/-5.2)		45.4
(+/-5.0)		84.5
(+/-2.7)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 212113D-PSSM101
12.6
(+/-0.7)		69
4.0
(+/-0.1)		44
1.5
(+/-1.0)		103
12.0
(+/-1.0)		36.6
(+/-2.4)		47.1
(+/-2.6)		55.4
(+/-2.1)		61.4
(+/-2.0)		83.3
(+/-1.4)
BLAST57
6.0
(+/-0.5)		36
3.0
(+/-0.1)		32
-3.2
(+/-1.4)		66
6.3
(+/-1.0)		25.2
(+/-2.5)		30.3
(+/-2.7)		32.6
(+/-2.4)		35.9
(+/-2.5)		46.4
(+/-2.4)
FUGUE90
11.1
(+/-0.7)		67
3.9
(+/-0.1)		40
1.1
(+/-1.0)		97
11.4
(+/-0.9)		31.9
(+/-2.6)		41.1
(+/-2.8)		52.4
(+/-2.2)		57.8
(+/-2.2)		81.5
(+/-1.8)
PSI-BLAST85
9.9
(+/-0.7)		59
3.6
(+/-0.1)		35
-3.4
(+/-1.4)		86
8.8
(+/-1.0)		32.5
(+/-2.4)		40.6
(+/-2.6)		43.5
(+/-2.4)		47.4
(+/-2.5)		58.7
(+/-2.6)
SAMt9996
11.3
(+/-0.6)		66
3.9
(+/-0.1)		44
0.5
(+/-1.2)		103
11.6
(+/-0.9)		35.5
(+/-2.6)		45.0
(+/-2.8)		52.9
(+/-2.3)		57.7
(+/-2.3)		73.0
(+/-2.3)
ssearch69
8.8
(+/-0.7)		57
3.4
(+/-0.1)		32
-0.1
(+/-1.0)		75
9.0
(+/-1.1)		26.9
(+/-2.8)		34.8
(+/-3.1)		46.2
(+/-2.6)		51.7
(+/-2.6)		81.5
(+/-1.9)
Superfamily90
10.3
(+/-0.6)		63
3.7
(+/-0.1)		41
-1.2
(+/-1.3)		94
9.8
(+/-0.9)		32.7
(+/-2.6)		41.2
(+/-2.8)		47.8
(+/-2.3)		52.4
(+/-2.4)		67.2
(+/-2.4)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 327013D-PSSM206
10.9
(+/-0.4)		138
3.7
(+/-0.1)		96
1.5
(+/-0.6)		208
10.4
(+/-0.7)		32.5
(+/-1.7)		42.5
(+/-1.9)		51.4
(+/-1.5)		57.0
(+/-1.5)		81.6
(+/-1.0)
BLAST109
5.2
(+/-0.3)		69
2.7
(+/-0.1)		67
-4.4
(+/-1.0)		120
4.8
(+/-0.6)		21.8
(+/-1.7)		26.2
(+/-1.8)		29.7
(+/-1.6)		32.9
(+/-1.6)		45.3
(+/-1.6)
FUGUE190
9.8
(+/-0.4)		141
3.7
(+/-0.1)		98
0.8
(+/-0.7)		201
10.3
(+/-0.6)		29.7
(+/-1.8)		38.1
(+/-1.9)		49.6
(+/-1.5)		54.8
(+/-1.5)		80.6
(+/-1.3)
PSI-BLAST153
8.2
(+/-0.4)		105
3.2
(+/-0.1)		71
-4.6
(+/-0.9)		159
7.2
(+/-0.7)		27.7
(+/-1.7)		34.5
(+/-1.8)		37.8
(+/-1.7)		41.5
(+/-1.7)		54.0
(+/-1.8)
SAMt99199
10.1
(+/-0.4)		133
3.7
(+/-0.1)		104
0.9
(+/-0.8)		209
10.5
(+/-0.6)		33.4
(+/-1.8)		41.6
(+/-2.0)		49.3
(+/-1.6)		53.9
(+/-1.6)		70.6
(+/-1.6)
ssearch141
7.6
(+/-0.4)		113
3.2
(+/-0.1)		73
0.1
(+/-0.6)		152
7.8
(+/-0.7)		23.9
(+/-1.9)		31.0
(+/-2.1)		43.1
(+/-1.8)		48.4
(+/-1.8)		83.0
(+/-1.2)

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