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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 842 268 method/index.html
3D-PSSM   561211method/3dpssm.html
BLAST   819264method/blast.html
FUGUE   669227method/fugue.html
Libellula   9248method/libellula.html
Prospect   14157method/prospect.html
PSI-BLAST   825267method/psiblast.html
SAMt99   366162method/samt99.html
ssearch   818264method/ssearch.html
Superfamily   306101method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 13113D-PSSM22
10.0
(+/-1.3)		13
3.4
(+/-0.3)		13
2.7
(+/-1.7)		22
9.0
(+/-2.0)		27.7
(+/-5.2)		37.1
(+/-6.0)		45.0
(+/-5.0)		50.0
(+/-4.9)		79.3
(+/-3.2)
BLAST11
5.5
(+/-1.1)		8
2.8
(+/-0.3)		7
-6.1
(+/-2.7)		12
4.9
(+/-2.0)		17.9
(+/-4.8)		20.9
(+/-5.0)		27.4
(+/-4.7)		30.7
(+/-4.7)		42.5
(+/-4.7)
FUGUE21
10.2
(+/-1.3)		15
3.7
(+/-0.3)		17
1.7
(+/-2.1)		23
9.8
(+/-1.9)		26.6
(+/-5.1)		34.7
(+/-5.7)		47.3
(+/-4.8)		52.0
(+/-4.9)		77.0
(+/-4.8)
Libellula20
9.8
(+/-1.4)		10
2.5
(+/-0.4)		14
4.8
(+/-2.1)		21
8.8
(+/-2.0)		26.4
(+/-5.4)		33.7
(+/-5.9)		31.9
(+/-5.2)		36.0
(+/-5.6)		83.6
(+/-3.6)
Prospect22
9.9
(+/-1.3)		14
3.4
(+/-0.3)		15
3.4
(+/-1.9)		20
9.3
(+/-2.0)		27.5
(+/-5.2)		35.8
(+/-5.6)		45.3
(+/-4.8)		50.0
(+/-4.8)		78.6
(+/-3.5)
PSI-BLAST12
7.1
(+/-1.4)		10
3.0
(+/-0.3)		6
-4.1
(+/-2.4)		13
6.4
(+/-2.2)		21.4
(+/-5.2)		26.7
(+/-5.4)		31.0
(+/-5.3)		34.1
(+/-5.4)		48.7
(+/-5.7)
SAMt9921
9.7
(+/-1.4)		14
3.7
(+/-0.3)		15
2.8
(+/-2.3)		21
9.4
(+/-1.9)		30.0
(+/-5.5)		37.5
(+/-6.1)		42.6
(+/-5.1)		47.3
(+/-5.3)		63.2
(+/-5.3)
ssearch14
7.7
(+/-1.3)		13
3.1
(+/-0.3)		6
-1.5
(+/-1.2)		17
7.0
(+/-2.0)		20.8
(+/-5.3)		26.2
(+/-5.8)		39.3
(+/-5.2)		44.2
(+/-5.0)		84.3
(+/-2.8)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 211913D-PSSM100
12.7
(+/-0.7)		68
4.0
(+/-0.1)		43
1.5
(+/-1.0)		101
11.7
(+/-0.9)		35.9
(+/-2.4)		46.4
(+/-2.6)		54.9
(+/-2.1)		60.9
(+/-2.1)		83.2
(+/-1.4)
BLAST56
6.0
(+/-0.5)		36
3.0
(+/-0.1)		31
-3.2
(+/-1.4)		64
6.0
(+/-1.0)		24.4
(+/-2.5)		29.5
(+/-2.7)		31.9
(+/-2.4)		35.2
(+/-2.5)		45.8
(+/-2.4)
FUGUE89
11.1
(+/-0.7)		66
3.9
(+/-0.1)		39
1.1
(+/-1.0)		95
11.1
(+/-0.9)		31.0
(+/-2.6)		40.3
(+/-2.8)		51.8
(+/-2.2)		57.3
(+/-2.2)		81.3
(+/-1.8)
PSI-BLAST84
9.9
(+/-0.7)		58
3.6
(+/-0.1)		34
-3.5
(+/-1.4)		84
8.6
(+/-1.0)		31.7
(+/-2.4)		39.8
(+/-2.6)		42.8
(+/-2.4)		46.8
(+/-2.5)		58.2
(+/-2.6)
SAMt9995
11.4
(+/-0.7)		65
3.9
(+/-0.1)		43
0.6
(+/-1.2)		101
11.4
(+/-0.9)		35.2
(+/-2.6)		44.6
(+/-2.8)		52.4
(+/-2.3)		57.3
(+/-2.3)		72.7
(+/-2.3)
ssearch68
8.8
(+/-0.7)		56
3.4
(+/-0.1)		31
-0.1
(+/-1.0)		73
8.7
(+/-1.1)		26.0
(+/-2.8)		34.0
(+/-3.1)		45.6
(+/-2.6)		51.1
(+/-2.7)		81.2
(+/-1.9)
Superfamily89
10.3
(+/-0.7)		62
3.7
(+/-0.1)		40
-1.2
(+/-1.3)		92
9.6
(+/-0.9)		31.9
(+/-2.6)		40.4
(+/-2.8)		47.2
(+/-2.3)		51.8
(+/-2.4)		66.8
(+/-2.4)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 326813D-PSSM205
10.9
(+/-0.4)		137
3.7
(+/-0.1)		95
1.5
(+/-0.6)		206
10.3
(+/-0.7)		32.1
(+/-1.7)		42.2
(+/-1.9)		51.1
(+/-1.5)		56.8
(+/-1.5)		81.5
(+/-1.0)
BLAST108
5.2
(+/-0.3)		69
2.7
(+/-0.1)		66
-4.4
(+/-1.0)		118
4.6
(+/-0.6)		21.4
(+/-1.7)		25.8
(+/-1.8)		29.3
(+/-1.6)		32.6
(+/-1.6)		45.0
(+/-1.6)
FUGUE189
9.8
(+/-0.4)		140
3.7
(+/-0.1)		97
0.8
(+/-0.7)		199
10.1
(+/-0.6)		29.3
(+/-1.8)		37.7
(+/-1.9)		49.3
(+/-1.5)		54.6
(+/-1.5)		80.5
(+/-1.3)
PSI-BLAST152
8.2
(+/-0.4)		104
3.2
(+/-0.1)		70
-4.6
(+/-0.9)		157
7.0
(+/-0.7)		27.3
(+/-1.6)		34.1
(+/-1.8)		37.5
(+/-1.7)		41.2
(+/-1.7)		53.7
(+/-1.8)
SAMt99198
10.1
(+/-0.4)		132
3.7
(+/-0.1)		103
0.9
(+/-0.8)		207
10.4
(+/-0.6)		33.2
(+/-1.8)		41.4
(+/-2.0)		49.0
(+/-1.6)		53.7
(+/-1.7)		70.4
(+/-1.6)
ssearch140
7.6
(+/-0.4)		112
3.2
(+/-0.1)		72
0.1
(+/-0.6)		150
7.7
(+/-0.7)		23.5
(+/-1.8)		30.6
(+/-2.0)		42.8
(+/-1.8)		48.1
(+/-1.8)		82.9
(+/-1.2)

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