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EVA summary for category threading, best of first 1 hits (1)

Contents

Local link to information about methods evaluated
All prediction results for threading

Common subset 1
Common subset 2
Common subset 3

All prediction results in ASCII (raw text)
Explanations of measures for prediction accuracy
For older versions of the results

About threading prediction methods evaluated

Method		Nprot	Nweek	Detailed results for method
ALL		842	268	method/index.html

3D-PSSM		561	211	method/3dpssm.html
BLAST		819	264	method/blast.html
FUGUE		669	227	method/fugue.html
Libellula		92	48	method/libellula.html
Prospect		141	57	method/prospect.html
PSI-BLAST		825	267	method/psiblast.html
SAMt99		366	162	method/samt99.html
ssearch		818	264	method/ssearch.html
Superfamily		306	101	method/superfamily.html

Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
Detail level 1 (this file) as ASCII

(...) contain standard error of a mean

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	31	1	3D-PSSM	22	13	13	22	27.7 (+/-5.2)
			BLAST	11	8	7	12	17.9 (+/-4.8)
			FUGUE	21	15	17	23	26.6 (+/-5.1)
			Libellula	20	10	14	21	26.4 (+/-5.4)
			Prospect	22	14	15	20	27.5 (+/-5.2)
			PSI-BLAST	12	10	6	13	21.4 (+/-5.2)
			SAMt99	21	14	15	21	30.0 (+/-5.5)
			ssearch	14	13	6	17	20.8 (+/-5.3)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	119	1	3D-PSSM	100	68	43	101	35.9 (+/-2.4)
			BLAST	56	36	31	64	24.4 (+/-2.5)
			FUGUE	89	66	39	95	31.0 (+/-2.6)
			PSI-BLAST	84	58	34	84	31.7 (+/-2.4)
			SAMt99	95	65	43	101	35.2 (+/-2.6)
			ssearch	68	56	31	73	26.0 (+/-2.8)
			Superfamily	89	62	40	92	31.9 (+/-2.6)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	268	1	3D-PSSM	205	137	95	206	32.1 (+/-1.7)
			BLAST	108	69	66	118	21.4 (+/-1.7)
			FUGUE	189	140	97	199	29.3 (+/-1.8)
			PSI-BLAST	152	104	70	157	27.3 (+/-1.6)
			SAMt99	198	132	103	207	33.2 (+/-1.8)
			ssearch	140	112	72	150	23.5 (+/-1.8)

Last update: Mar 27, 2003
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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