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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 789 251 method/index.html
3D-PSSM   523195method/3dpssm.html
BLAST   575217method/blast.html
FUGUE   442176method/fugue.html
Libellula   8139method/libellula.html
Prospect   12246method/prospect.html
PSI-BLAST   609226method/psiblast.html
SAMt99   351148method/samt99.html
ssearch   439188method/ssearch.html
Superfamily   22187method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 12013D-PSSM13
9.9
(+/-1.9)		4
2.5
(+/-0.3)		9
3.8
(+/-2.3)		14
8.3
(+/-2.2)		24.6
(+/-6.2)		32.0
(+/-7.3)		32.6
(+/-6.3)		37.5
(+/-6.4)		77.0
(+/-4.1)
BLAST8
5.6
(+/-1.3)		4
2.6
(+/-0.2)		5
-1.7
(+/-3.2)		8
4.1
(+/-1.8)		16.7
(+/-4.9)		19.2
(+/-5.2)		20.0
(+/-4.0)		23.3
(+/-4.2)		40.2
(+/-4.6)
FUGUE13
10.6
(+/-1.8)		8
3.2
(+/-0.3)		13
3.9
(+/-2.7)		16
9.6
(+/-1.9)		23.2
(+/-5.6)		30.3
(+/-6.8)		37.2
(+/-5.3)		44.7
(+/-6.3)		78.0
(+/-5.7)
Libellula12
9.9
(+/-1.9)		5
2.4
(+/-0.4)		8
4.3
(+/-2.5)		14
8.6
(+/-2.2)		23.5
(+/-6.5)		29.4
(+/-7.3)		33.5
(+/-6.5)		37.5
(+/-6.9)		84.3
(+/-4.8)
Prospect14
10.4
(+/-1.8)		8
3.0
(+/-0.4)		11
5.4
(+/-2.3)		13
8.5
(+/-2.0)		26.4
(+/-6.2)		34.1
(+/-6.9)		37.2
(+/-6.2)		42.3
(+/-6.5)		93.5
(+/-10.2)
PSI-BLAST10
8.8
(+/-2.0)		5
3.0
(+/-0.3)		7
-0.0
(+/-3.5)		10
7.1
(+/-2.3)		22.3
(+/-5.6)		27.2
(+/-6.2)		27.7
(+/-5.6)		31.3
(+/-5.6)		51.0
(+/-6.9)
SAMt9912
9.9
(+/-2.0)		4
2.7
(+/-0.4)		10
2.2
(+/-2.4)		14
8.1
(+/-2.0)		27.0
(+/-6.6)		33.9
(+/-7.5)		33.3
(+/-6.7)		39.0
(+/-7.1)		63.5
(+/-6.6)
ssearch8
7.8
(+/-1.8)		3
2.5
(+/-0.3)		5
-0.2
(+/-1.6)		11
6.3
(+/-2.1)		18.2
(+/-5.8)		23.4
(+/-6.9)		33.2
(+/-5.9)		37.9
(+/-5.9)		85.8
(+/-3.6)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 24813D-PSSM37
9.5
(+/-0.8)		16
2.8
(+/-0.2)		23
3.9
(+/-2.1)		38
11.4
(+/-1.8)		38.1
(+/-4.0)		48.9
(+/-4.1)		44.4
(+/-4.3)		48.7
(+/-4.5)		84.8
(+/-1.9)
BLAST23
5.3
(+/-0.6)		17
3.0
(+/-0.2)		19
-0.9
(+/-2.8)		30
6.6
(+/-1.7)		29.0
(+/-4.1)		35.1
(+/-4.2)		35.9
(+/-3.8)		39.0
(+/-3.9)		52.5
(+/-3.8)
FUGUE34
8.4
(+/-0.7)		16
2.7
(+/-0.2)		24
4.4
(+/-1.9)		39
11.7
(+/-1.6)		37.2
(+/-4.2)		46.5
(+/-4.4)		39.8
(+/-4.2)		44.6
(+/-4.3)		80.4
(+/-2.8)
PSI-BLAST29
7.2
(+/-0.8)		15
2.9
(+/-0.2)		20
-2.7
(+/-2.5)		31
8.3
(+/-1.9)		32.2
(+/-4.1)		40.6
(+/-4.1)		41.9
(+/-3.9)		46.4
(+/-4.0)		63.2
(+/-3.8)
SAMt9936
8.9
(+/-0.8)		16
3.0
(+/-0.2)		25
3.3
(+/-2.1)		40
11.8
(+/-1.6)		38.5
(+/-4.3)		48.8
(+/-4.3)		48.2
(+/-4.1)		53.1
(+/-4.2)		79.1
(+/-3.1)
ssearch29
7.5
(+/-0.9)		22
3.0
(+/-0.2)		20
1.5
(+/-1.9)		32
10.3
(+/-1.9)		31.6
(+/-4.6)		39.9
(+/-5.0)		47.3
(+/-4.4)		52.6
(+/-4.4)		84.9
(+/-2.7)
Superfamily31
7.7
(+/-0.7)		16
2.9
(+/-0.2)		23
1.2
(+/-2.3)		36
9.7
(+/-1.8)		34.4
(+/-4.4)		43.3
(+/-4.6)		45.6
(+/-4.0)		51.1
(+/-4.1)		72.4
(+/-3.6)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 312013D-PSSM86
9.8
(+/-0.6)		34
2.6
(+/-0.1)		47
1.9
(+/-1.1)		90
10.2
(+/-1.1)		31.3
(+/-2.7)		41.1
(+/-2.8)		36.9
(+/-2.8)		41.4
(+/-2.9)		80.6
(+/-1.5)
BLAST53
5.4
(+/-0.5)		31
2.7
(+/-0.1)		34
-3.5
(+/-1.4)		60
4.8
(+/-0.9)		22.1
(+/-2.4)		26.6
(+/-2.5)		27.9
(+/-2.3)		31.3
(+/-2.3)		47.1
(+/-2.2)
FUGUE83
9.3
(+/-0.6)		41
2.9
(+/-0.1)		50
1.3
(+/-1.2)		93
10.5
(+/-0.9)		30.8
(+/-2.7)		39.2
(+/-2.9)		39.1
(+/-2.6)		44.7
(+/-2.7)		79.5
(+/-2.0)
PSI-BLAST67
7.9
(+/-0.6)		37
2.9
(+/-0.1)		36
-4.6
(+/-1.5)		73
7.6
(+/-1.1)		27.7
(+/-2.5)		34.4
(+/-2.7)		34.5
(+/-2.5)		38.1
(+/-2.6)		55.3
(+/-2.6)
SAMt9983
9.3
(+/-0.6)		40
3.0
(+/-0.1)		49
0.6
(+/-1.2)		91
10.1
(+/-1.0)		32.3
(+/-2.7)		40.9
(+/-2.9)		40.9
(+/-2.7)		46.0
(+/-2.8)		71.4
(+/-2.4)
ssearch67
7.9
(+/-0.7)		38
2.8
(+/-0.1)		35
-0.2
(+/-0.9)		71
8.2
(+/-1.1)		25.0
(+/-2.8)		32.2
(+/-3.1)		38.2
(+/-2.8)		42.9
(+/-2.8)		83.6
(+/-1.6)

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