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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 779 249 method/index.html
3D-PSSM   508187method/3dpssm.html
BLAST   566215method/blast.html
FUGUE   411161method/fugue.html
Libellula   7435method/libellula.html
Prospect   10435method/prospect.html
PSI-BLAST   601224method/psiblast.html
SAMt99   339141method/samt99.html
ssearch   431186method/ssearch.html
Superfamily   22187method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11913D-PSSM15
12.9
(+/-1.8)		11
3.7
(+/-0.3)		12
6.1
(+/-2.2)		15
11.8
(+/-2.1)		35.0
(+/-6.6)		43.2
(+/-7.3)
BLAST7
6.1
(+/-1.3)		4
3.1
(+/-0.3)		6
0.3
(+/-3.2)		8
5.2
(+/-2.0)		16.4
(+/-4.9)		19.7
(+/-5.2)
FUGUE16
13.0
(+/-1.7)		12
3.9
(+/-0.2)		13
6.7
(+/-1.9)		17
11.6
(+/-1.7)		30.0
(+/-6.1)		39.4
(+/-7.2)
Libellula14
13.4
(+/-2.1)		7
3.4
(+/-0.3)		10
7.3
(+/-2.5)		15
11.5
(+/-2.0)		33.2
(+/-6.8)		41.6
(+/-7.4)
Prospect13
11.4
(+/-1.9)		12
3.7
(+/-0.3)		11
6.5
(+/-2.2)		15
10.5
(+/-1.9)		27.0
(+/-6.2)		35.7
(+/-6.9)
PSI-BLAST10
9.4
(+/-2.0)		6
3.5
(+/-0.3)		6
0.1
(+/-3.5)		11
7.5
(+/-2.4)		24.0
(+/-5.9)		29.0
(+/-6.4)
SAMt9912
11.2
(+/-2.3)		6
3.2
(+/-0.4)		9
3.8
(+/-2.6)		14
9.1
(+/-2.0)		29.1
(+/-6.8)		35.3
(+/-7.6)
ssearch7
8.3
(+/-1.9)		5
3.4
(+/-0.2)		6
0.8
(+/-1.7)		12
7.3
(+/-2.2)		18.4
(+/-6.0)		24.4
(+/-6.8)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 24813D-PSSM40
10.5
(+/-0.8)		25
3.6
(+/-0.2)		28
6.4
(+/-2.1)		41
14.3
(+/-1.7)		46.2
(+/-3.7)		55.8
(+/-3.8)
BLAST26
6.3
(+/-0.6)		21
3.3
(+/-0.2)		20
2.1
(+/-3.0)		35
9.7
(+/-1.8)		33.7
(+/-3.9)		39.8
(+/-4.1)
FUGUE39
9.9
(+/-0.7)		24
3.7
(+/-0.2)		28
6.4
(+/-1.9)		45
14.9
(+/-1.5)		44.3
(+/-4.0)		54.7
(+/-4.0)
PSI-BLAST31
7.9
(+/-0.8)		18
3.4
(+/-0.2)		23
0.3
(+/-2.5)		34
10.2
(+/-1.9)		36.6
(+/-3.9)		44.9
(+/-3.8)
SAMt9938
9.6
(+/-0.8)		25
3.6
(+/-0.2)		27
6.6
(+/-2.2)		43
15.1
(+/-1.6)		44.1
(+/-4.2)		53.1
(+/-4.1)
ssearch32
8.2
(+/-0.8)		25
3.5
(+/-0.2)		22
4.0
(+/-2.0)		37
12.7
(+/-1.9)		36.1
(+/-4.5)		45.9
(+/-4.6)
Superfamily33
8.3
(+/-0.7)		19
3.3
(+/-0.2)		24
6.1
(+/-2.0)		38
12.1
(+/-1.9)		39.9
(+/-4.5)		47.8
(+/-4.5)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 311413D-PSSM93
11.2
(+/-0.6)		51
3.5
(+/-0.1)		57
4.3
(+/-1.1)		97
12.9
(+/-1.0)		37.7
(+/-2.6)		47.0
(+/-2.7)
BLAST57
6.4
(+/-0.5)		41
3.2
(+/-0.1)		39
-0.2
(+/-1.6)		67
7.3
(+/-1.0)		25.8
(+/-2.5)		30.7
(+/-2.7)
FUGUE95
10.9
(+/-0.6)		57
3.7
(+/-0.1)		57
4.4
(+/-1.0)		103
13.4
(+/-0.9)		36.4
(+/-2.7)		46.2
(+/-2.8)
PSI-BLAST70
8.6
(+/-0.6)		44
3.3
(+/-0.1)		41
-0.9
(+/-1.4)		78
9.1
(+/-1.1)		31.6
(+/-2.6)		38.5
(+/-2.7)
SAMt9985
10.2
(+/-0.7)		52
3.4
(+/-0.1)		50
2.9
(+/-1.3)		94
12.2
(+/-1.0)		36.0
(+/-2.8)		44.0
(+/-2.9)
ssearch67
8.4
(+/-0.7)		47
3.4
(+/-0.1)		38
1.7
(+/-1.0)		75
9.9
(+/-1.2)		28.0
(+/-2.9)		35.8
(+/-3.1)

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