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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 756 243 method/index.html
3D-PSSM   508187method/3dpssm.html
BLAST   543209method/blast.html
FUGUE   411161method/fugue.html
Libellula   7435method/libellula.html
Prospect   10435method/prospect.html
PSI-BLAST   579218method/psiblast.html
SAMt99   339141method/samt99.html
ssearch   408180method/ssearch.html
Superfamily   22187method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11913D-PSSM12
9.9
(+/-2.0)		4
2.6
(+/-0.3)		8
2.9
(+/-2.3)		13
7.9
(+/-2.2)		23.6
(+/-6.4)		30.4
(+/-7.5)		33.3
(+/-6.6)		38.3
(+/-6.7)		76.4
(+/-4.3)
BLAST7
5.5
(+/-1.3)		3
2.5
(+/-0.2)		4
-3.3
(+/-3.0)		7
3.6
(+/-1.8)		15.3
(+/-4.9)		17.8
(+/-5.3)		18.7
(+/-4.0)		22.2
(+/-4.3)		39.8
(+/-4.8)
FUGUE12
10.5
(+/-1.8)		8
3.3
(+/-0.3)		12
3.0
(+/-2.7)		15
9.2
(+/-2.0)		21.9
(+/-5.7)		28.6
(+/-6.9)		38.1
(+/-5.5)		45.9
(+/-6.5)		77.4
(+/-6.0)
Libellula12
10.3
(+/-2.0)		5
2.5
(+/-0.4)		8
4.9
(+/-2.5)		14
9.4
(+/-2.1)		24.6
(+/-6.7)		30.5
(+/-7.6)		34.3
(+/-6.9)		38.2
(+/-7.3)		84.3
(+/-5.1)
Prospect13
10.4
(+/-1.9)		8
3.1
(+/-0.4)		10
4.4
(+/-2.2)		12
8.1
(+/-2.1)		24.9
(+/-6.3)		32.9
(+/-7.1)		36.5
(+/-6.5)		41.3
(+/-6.8)		95.1
(+/-10.7)
PSI-BLAST9
8.8
(+/-2.1)		4
3.0
(+/-0.3)		6
-1.7
(+/-3.3)		9
6.7
(+/-2.4)		21.2
(+/-5.8)		26.3
(+/-6.5)		26.8
(+/-5.9)		30.5
(+/-5.9)		51.2
(+/-7.3)
SAMt9911
9.8
(+/-2.1)		4
2.7
(+/-0.4)		9
1.2
(+/-2.3)		13
7.6
(+/-2.0)		25.1
(+/-6.6)		32.0
(+/-7.7)		31.4
(+/-6.8)		37.4
(+/-7.3)		62.6
(+/-6.9)
ssearch7
7.6
(+/-1.9)		3
2.6
(+/-0.3)		4
-1.2
(+/-1.3)		10
5.8
(+/-2.1)		16.5
(+/-5.9)		21.3
(+/-6.9)		33.9
(+/-6.2)		38.8
(+/-6.1)		85.7
(+/-3.8)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 24813D-PSSM37
9.5
(+/-0.8)		16
2.8
(+/-0.2)		23
3.9
(+/-2.1)		38
11.4
(+/-1.8)		38.1
(+/-4.0)		48.9
(+/-4.1)		44.4
(+/-4.3)		48.7
(+/-4.5)		84.8
(+/-1.9)
BLAST23
5.3
(+/-0.6)		17
3.0
(+/-0.2)		19
-0.9
(+/-2.8)		30
6.6
(+/-1.7)		29.0
(+/-4.1)		35.1
(+/-4.2)		35.9
(+/-3.8)		39.0
(+/-3.9)		52.5
(+/-3.8)
FUGUE34
8.4
(+/-0.7)		16
2.7
(+/-0.2)		24
4.4
(+/-1.9)		39
11.7
(+/-1.6)		37.2
(+/-4.2)		46.5
(+/-4.4)		39.8
(+/-4.2)		44.6
(+/-4.3)		80.4
(+/-2.8)
PSI-BLAST29
7.2
(+/-0.8)		15
2.9
(+/-0.2)		20
-2.7
(+/-2.5)		31
8.3
(+/-1.9)		32.2
(+/-4.1)		40.6
(+/-4.1)		41.9
(+/-3.9)		46.4
(+/-4.0)		63.2
(+/-3.8)
SAMt9936
8.9
(+/-0.8)		16
3.0
(+/-0.2)		25
3.3
(+/-2.1)		40
11.8
(+/-1.6)		38.5
(+/-4.3)		48.8
(+/-4.3)		48.2
(+/-4.1)		53.1
(+/-4.2)		79.1
(+/-3.1)
ssearch29
7.5
(+/-0.9)		22
3.0
(+/-0.2)		20
1.5
(+/-1.9)		32
10.3
(+/-1.9)		31.6
(+/-4.6)		39.9
(+/-5.0)		47.3
(+/-4.4)		52.6
(+/-4.4)		84.9
(+/-2.7)
Superfamily31
7.7
(+/-0.7)		16
2.9
(+/-0.2)		23
1.2
(+/-2.3)		36
9.7
(+/-1.8)		34.4
(+/-4.4)		43.3
(+/-4.6)		45.6
(+/-4.0)		51.1
(+/-4.1)		72.4
(+/-3.6)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 311413D-PSSM82
9.7
(+/-0.6)		31
2.5
(+/-0.1)		45
2.0
(+/-1.1)		86
10.0
(+/-1.1)		30.7
(+/-2.7)		40.4
(+/-2.8)		36.4
(+/-2.9)		40.9
(+/-2.9)		80.4
(+/-1.6)
BLAST50
5.4
(+/-0.5)		30
2.7
(+/-0.1)		33
-3.4
(+/-1.4)		58
5.0
(+/-0.9)		22.4
(+/-2.5)		26.9
(+/-2.6)		28.1
(+/-2.3)		31.5
(+/-2.4)		47.0
(+/-2.3)
FUGUE79
9.3
(+/-0.6)		38
2.8
(+/-0.1)		48
1.9
(+/-1.1)		89
10.4
(+/-0.9)		30.7
(+/-2.7)		39.1
(+/-2.9)		39.0
(+/-2.6)		44.7
(+/-2.7)		79.6
(+/-1.9)
PSI-BLAST63
7.8
(+/-0.7)		33
2.9
(+/-0.1)		34
-4.3
(+/-1.5)		69
7.4
(+/-1.1)		27.0
(+/-2.6)		33.6
(+/-2.7)		33.9
(+/-2.6)		37.5
(+/-2.6)		55.2
(+/-2.7)
SAMt9978
9.2
(+/-0.7)		38
3.0
(+/-0.1)		47
0.6
(+/-1.2)		87
9.9
(+/-1.0)		31.5
(+/-2.8)		40.0
(+/-3.0)		40.2
(+/-2.8)		45.3
(+/-2.8)		70.9
(+/-2.4)
ssearch62
7.7
(+/-0.7)		38
2.8
(+/-0.1)		33
-0.2
(+/-1.0)		66
7.9
(+/-1.1)		24.7
(+/-2.9)		31.7
(+/-3.1)		39.1
(+/-2.9)		44.0
(+/-2.9)		83.6
(+/-1.6)

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