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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 756 243 method/index.html
3D-PSSM   508187method/3dpssm.html
BLAST   543209method/blast.html
FUGUE   411161method/fugue.html
Libellula   7435method/libellula.html
LOOPP   483184method/loopp.html
Prospect   10435method/prospect.html
PSI-BLAST   478206method/psiblast.html
SAMt99   339141method/samt99.html
ssearch   318156method/ssearch.html
Superfamily   22187method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 11913D-PSSM12
9.9
(+/-2.0)		4
2.6
(+/-0.3)		8
2.9
(+/-2.3)		13
7.9
(+/-2.2)		23.6
(+/-6.4)		30.4
(+/-7.5)		33.3
(+/-6.6)		38.3
(+/-6.7)		76.4
(+/-4.3)
BLAST7
5.5
(+/-1.3)		3
2.5
(+/-0.2)		4
-3.3
(+/-3.0)		7
3.6
(+/-1.8)		15.3
(+/-4.9)		17.8
(+/-5.3)		18.7
(+/-4.0)		22.2
(+/-4.3)		39.8
(+/-4.8)
FUGUE12
10.5
(+/-1.8)		8
3.3
(+/-0.3)		12
3.0
(+/-2.7)		15
9.2
(+/-2.0)		21.9
(+/-5.7)		28.6
(+/-6.9)		38.1
(+/-5.5)		45.9
(+/-6.5)		77.4
(+/-6.0)
Libellula12
10.3
(+/-2.0)		5
2.5
(+/-0.4)		8
4.9
(+/-2.5)		14
9.4
(+/-2.1)		24.6
(+/-6.7)		30.5
(+/-7.6)		34.3
(+/-6.9)		38.2
(+/-7.3)		84.3
(+/-5.1)
LOOPP2
3.6
(+/-1.4)		2
2.2
(+/-0.3)		4
-1.2
(+/-1.0)		4
0.8
(+/-1.5)		3.3
(+/-2.0)		6.9
(+/-3.1)		18.3
(+/-4.6)		24.7
(+/-5.1)		90.6
(+/-2.9)
Prospect13
10.4
(+/-1.9)		8
3.1
(+/-0.4)		10
4.4
(+/-2.2)		12
8.1
(+/-2.1)		24.9
(+/-6.3)		32.9
(+/-7.1)		36.5
(+/-6.5)		41.3
(+/-6.8)		95.1
(+/-10.7)
PSI-BLAST9
8.8
(+/-2.1)		4
3.0
(+/-0.3)		6
-1.7
(+/-3.3)		9
6.7
(+/-2.4)		21.2
(+/-5.8)		26.3
(+/-6.5)		26.8
(+/-5.9)		30.5
(+/-5.9)		51.2
(+/-7.3)
SAMt9911
9.8
(+/-2.1)		4
2.7
(+/-0.4)		9
1.2
(+/-2.3)		13
7.6
(+/-2.0)		25.1
(+/-6.6)		32.0
(+/-7.7)		31.4
(+/-6.8)		37.4
(+/-7.3)		62.6
(+/-6.9)
ssearch7
7.6
(+/-1.9)		3
2.6
(+/-0.3)		4
-1.2
(+/-1.3)		10
5.8
(+/-2.1)		16.5
(+/-5.9)		21.3
(+/-6.9)		33.9
(+/-6.2)		38.8
(+/-6.1)		85.7
(+/-3.8)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 24413D-PSSM33
9.4
(+/-0.9)		14
2.8
(+/-0.2)		20
3.8
(+/-2.3)		34
11.9
(+/-2.0)		38.7
(+/-4.3)		49.1
(+/-4.3)		44.4
(+/-4.5)		48.7
(+/-4.7)		84.5
(+/-2.1)
BLAST20
5.2
(+/-0.6)		15
3.1
(+/-0.2)		17
-1.1
(+/-2.9)		27
6.7
(+/-1.8)		29.3
(+/-4.4)		35.1
(+/-4.5)		36.5
(+/-4.1)		39.0
(+/-4.1)		52.4
(+/-3.9)
FUGUE30
8.2
(+/-0.8)		13
2.6
(+/-0.2)		21
4.3
(+/-2.1)		35
11.9
(+/-1.7)		37.2
(+/-4.5)		46.0
(+/-4.6)		38.2
(+/-4.5)		42.6
(+/-4.5)		80.5
(+/-2.9)
LOOPP9
3.0
(+/-0.4)		6
2.0
(+/-0.2)		6
-3.7
(+/-1.7)		14
3.4
(+/-2.0)		14.6
(+/-4.1)		19.6
(+/-4.4)		25.0
(+/-3.9)		29.6
(+/-3.8)		86.6
(+/-2.5)
PSI-BLAST27
7.4
(+/-0.9)		15
3.0
(+/-0.2)		19
-2.2
(+/-2.7)		29
8.7
(+/-2.1)		33.4
(+/-4.3)		41.3
(+/-4.3)		43.8
(+/-4.1)		48.2
(+/-4.1)		63.6
(+/-4.0)
SAMt9933
8.9
(+/-0.8)		13
3.0
(+/-0.2)		22
3.1
(+/-2.3)		37
12.2
(+/-1.7)		38.8
(+/-4.6)		48.5
(+/-4.5)		47.6
(+/-4.4)		52.4
(+/-4.5)		78.6
(+/-3.3)
ssearch26
7.5
(+/-0.9)		20
3.1
(+/-0.2)		18
1.8
(+/-2.1)		29
10.7
(+/-2.1)		32.6
(+/-4.9)		40.5
(+/-5.3)		48.1
(+/-4.8)		52.7
(+/-4.7)		85.5
(+/-2.8)
Superfamily28
7.7
(+/-0.8)		14
2.9
(+/-0.2)		20
0.7
(+/-2.4)		33
9.9
(+/-2.0)		34.1
(+/-4.7)		42.7
(+/-4.9)		44.9
(+/-4.3)		50.4
(+/-4.3)		71.8
(+/-3.8)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 39713D-PSSM66
9.4
(+/-0.7)		25
2.6
(+/-0.2)		40
2.5
(+/-1.3)		72
10.0
(+/-1.2)		30.7
(+/-3.0)		39.8
(+/-3.1)		36.3
(+/-3.1)		41.1
(+/-3.2)		80.3
(+/-1.7)
BLAST39
5.3
(+/-0.5)		24
2.7
(+/-0.1)		29
-2.9
(+/-1.6)		47
4.7
(+/-1.0)		21.9
(+/-2.8)		26.2
(+/-2.9)		27.7
(+/-2.6)		30.9
(+/-2.6)		47.0
(+/-2.5)
FUGUE63
9.0
(+/-0.7)		32
2.8
(+/-0.2)		43
2.4
(+/-1.2)		74
10.4
(+/-1.1)		30.5
(+/-3.1)		38.6
(+/-3.3)		37.7
(+/-2.9)		43.3
(+/-3.0)		79.3
(+/-2.2)
LOOPP15
3.0
(+/-0.3)		10
2.1
(+/-0.1)		11
-3.2
(+/-0.9)		24
1.4
(+/-1.0)		9.0
(+/-2.1)		13.6
(+/-2.4)		21.1
(+/-2.2)		26.1
(+/-2.3)		88.1
(+/-1.5)
PSI-BLAST53
7.7
(+/-0.7)		27
2.9
(+/-0.1)		32
-3.5
(+/-1.6)		57
7.2
(+/-1.2)		27.1
(+/-2.8)		33.5
(+/-3.0)		35.0
(+/-2.8)		38.7
(+/-2.9)		54.9
(+/-2.9)
SAMt9965
9.0
(+/-0.7)		29
2.9
(+/-0.2)		41
0.9
(+/-1.4)		73
9.8
(+/-1.1)		31.2
(+/-3.1)		39.5
(+/-3.3)		39.7
(+/-3.1)		44.7
(+/-3.1)		69.7
(+/-2.8)
ssearch51
7.8
(+/-0.7)		34
2.9
(+/-0.2)		29
0.2
(+/-1.1)		56
7.9
(+/-1.2)		25.2
(+/-3.2)		31.8
(+/-3.5)		40.5
(+/-3.1)		45.3
(+/-3.1)		84.6
(+/-1.7)

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