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EVA summary for category threading, best of first 5 hits (1)

Contents

Local link to information about methods evaluated
All prediction results for threading

Common subset 1
Common subset 2
Common subset 3

All prediction results in ASCII (raw text)
Explanations of measures for prediction accuracy
For older versions of the results

About threading prediction methods evaluated

Method		Nprot	Nweek	Detailed results for method
ALL		756	243	method/index.html

3D-PSSM		508	187	method/3dpssm.html
BLAST		543	209	method/blast.html
FUGUE		411	161	method/fugue.html
Libellula		74	35	method/libellula.html
LOOPP		483	184	method/loopp.html
Prospect		104	35	method/prospect.html
PSI-BLAST		478	206	method/psiblast.html
SAMt99		339	141	method/samt99.html
ssearch		318	156	method/ssearch.html
Superfamily		221	87	method/superfamily.html

Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
Detail level 1 (this file) as ASCII

(...) contain standard error of a mean

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	19	1	3D-PSSM	15	11	12	15	35.0 (+/-6.6)
			BLAST	7	4	6	8	16.4 (+/-4.9)
			FUGUE	16	12	13	17	30.0 (+/-6.1)
			Libellula	14	7	10	15	33.2 (+/-6.8)
			LOOPP	7	3	8	8	10.3 (+/-3.9)
			Prospect	13	12	11	15	27.0 (+/-6.2)
			PSI-BLAST	10	6	6	11	24.0 (+/-5.9)
			SAMt99	12	6	9	14	29.1 (+/-6.8)
			ssearch	7	5	6	12	18.4 (+/-6.0)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	44	1	3D-PSSM	36	23	25	37	46.8 (+/-3.9)
			BLAST	23	19	18	31	34.4 (+/-4.2)
			FUGUE	35	21	25	41	44.9 (+/-4.2)
			LOOPP	21	10	16	26	30.2 (+/-4.6)
			PSI-BLAST	28	17	21	31	37.8 (+/-4.1)
			SAMt99	34	22	24	39	44.3 (+/-4.5)
			ssearch	28	22	19	33	35.9 (+/-4.8)
			Superfamily	30	17	21	34	39.7 (+/-4.7)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	97	1	3D-PSSM	76	44	52	81	38.0 (+/-2.9)
			BLAST	45	34	35	55	25.3 (+/-2.8)
			FUGUE	78	49	51	86	36.5 (+/-3.0)
			LOOPP	38	18	32	53	18.6 (+/-2.6)
			PSI-BLAST	56	34	36	64	31.1 (+/-2.8)
			SAMt99	70	42	44	78	35.6 (+/-3.1)
			ssearch	54	41	33	64	27.4 (+/-3.2)

Last update: Nov 26, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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