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EVA summary for category threading, best of first 5 hits

Contents

About threading methods evaluated

Method NprotNweekDetailed results for method
ALL 756 243 method/index.html
3D-PSSM   508187method/3dpssm.html
BLAST   543209method/blast.html
FUGUE   411161method/fugue.html
Libellula   7435method/libellula.html
LOOPP   483184method/loopp.html
Prospect   10435method/prospect.html
PSI-BLAST   478206method/psiblast.html
SAMt99   339141method/samt99.html
ssearch   318156method/ssearch.html
Superfamily   22187method/superfamily.html

TABLES

  • table entries are mean differences between servers ( server in row - server in column )

  • (...) contain standard error of a mean
  • [...] contain sample size

    • Table for measure N3.5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    6
    11.9
    (+/-1.0)[382]
    3.3
    (+/-0.9)[334]
    1.0
    (+/-1.4)[52]
    18.9
    (+/-1.3)[316]
    1.5
    (+/-1.8)[82]
    7.2
    (+/-1.0)[336]
    1.0
    (+/-0.9)[261]
    11.7
    (+/-1.4)[212]
    4.5
    (+/-1.3)[176]
    blast
    1
    -11.9
    (+/-1.0)[382]
    -10.3
    (+/-1.1)[322]
    -11.8
    (+/-2.2)[74]
    5.1
    (+/-0.9)[370]
    -12.3
    (+/-2.0)[103]
    -5.6
    (+/-0.8)[394]
    -12.4
    (+/-1.2)[271]
    -2.3
    (+/-1.1)[187]
    -5.6
    (+/-1.4)[200]
    fugue
    4
    -3.3
    (+/-0.9)[334]
    10.3
    (+/-1.1)[322]
    3.3
    (+/-2.3)[59]
    16.3
    (+/-1.4)[272]
    1.2
    (+/-1.8)[91]
    4.4
    (+/-1.1)[294]
    -0.9
    (+/-1.1)[224]
    7.9
    (+/-1.5)[168]
    1.4
    (+/-1.8)[128]
    libellula
    4
    -1.0
    (+/-1.4)[52]
    11.8
    (+/-2.2)[74]
    -3.3
    (+/-2.3)[59]
    19.3
    (+/-3.4)[57]
    -0.1
    (+/-2.7)[47]
    5.2
    (+/-1.8)[67]
    3.9
    (+/-2.2)[37]
    13.5
    (+/-3.6)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -18.9
    (+/-1.3)[316]
    -5.1
    (+/-0.9)[370]
    -16.3
    (+/-1.4)[272]
    -19.3
    (+/-3.4)[57]
    -16.7
    (+/-2.6)[92]
    -11.8
    (+/-1.2)[327]
    -21.0
    (+/-1.6)[234]
    -7.3
    (+/-1.4)[224]
    -9.8
    (+/-1.7)[153]
    prospect
    4
    -1.5
    (+/-1.8)[82]
    12.3
    (+/-2.0)[103]
    -1.2
    (+/-1.8)[91]
    0.1
    (+/-2.7)[47]
    16.7
    (+/-2.6)[92]
    6.7
    (+/-2.1)[95]
    -1.7
    (+/-2.6)[41]
    8.1
    (+/-3.5)[25]
    7.1
    (+/-6.0)[11]
    psiblast
    3
    -7.2
    (+/-1.0)[336]
    5.6
    (+/-0.8)[394]
    -4.4
    (+/-1.1)[294]
    -5.2
    (+/-1.8)[67]
    11.8
    (+/-1.2)[327]
    -6.7
    (+/-2.1)[95]
    -5.0
    (+/-1.0)[240]
    3.8
    (+/-1.2)[211]
    -1.6
    (+/-1.7)[143]
    samt99
    4
    -1.0
    (+/-0.9)[261]
    12.4
    (+/-1.2)[271]
    0.9
    (+/-1.1)[224]
    -3.9
    (+/-2.2)[37]
    21.0
    (+/-1.6)[234]
    1.7
    (+/-2.6)[41]
    5.0
    (+/-1.0)[240]
    10.6
    (+/-1.4)[162]
    3.0
    (+/-1.8)[105]
    ssearch
    2
    -11.7
    (+/-1.4)[212]
    2.3
    (+/-1.1)[187]
    -7.9
    (+/-1.5)[168]
    -13.5
    (+/-3.6)[22]
    7.3
    (+/-1.4)[224]
    -8.1
    (+/-3.5)[25]
    -3.8
    (+/-1.2)[211]
    -10.6
    (+/-1.4)[162]
    -2.9
    (+/-2.2)[93]
    superfamily
    2
    -4.5
    (+/-1.3)[176]
    5.6
    (+/-1.4)[200]
    -1.4
    (+/-1.8)[128]
    -0.0
    (+/-0.0)[0]
    9.8
    (+/-1.7)[153]
    -7.1
    (+/-6.0)[11]
    1.6
    (+/-1.7)[143]
    -3.0
    (+/-1.8)[105]
    2.9
    (+/-2.2)[93]

    Table for measure N5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    7
    17.0
    (+/-1.1)[382]
    4.0
    (+/-0.9)[334]
    2.5
    (+/-2.0)[52]
    22.6
    (+/-1.4)[316]
    1.8
    (+/-1.8)[82]
    10.9
    (+/-1.1)[336]
    3.3
    (+/-0.9)[261]
    13.3
    (+/-1.5)[212]
    7.9
    (+/-1.4)[176]
    blast
    1
    -17.0
    (+/-1.1)[382]
    -14.6
    (+/-1.2)[322]
    -15.1
    (+/-2.5)[74]
    3.8
    (+/-1.0)[370]
    -16.4
    (+/-2.1)[103]
    -6.8
    (+/-0.9)[394]
    -15.7
    (+/-1.3)[271]
    -5.2
    (+/-1.2)[187]
    -7.0
    (+/-1.5)[200]
    fugue
    5
    -4.0
    (+/-0.9)[334]
    14.6
    (+/-1.2)[322]
    4.7
    (+/-2.5)[59]
    19.5
    (+/-1.5)[272]
    0.5
    (+/-2.1)[91]
    8.0
    (+/-1.2)[294]
    1.2
    (+/-1.1)[224]
    10.3
    (+/-1.7)[168]
    4.4
    (+/-1.7)[128]
    libellula
    5
    -2.5
    (+/-2.0)[52]
    15.1
    (+/-2.5)[74]
    -4.7
    (+/-2.5)[59]
    21.3
    (+/-3.6)[57]
    -0.8
    (+/-3.1)[47]
    8.0
    (+/-2.0)[67]
    5.4
    (+/-2.6)[37]
    15.4
    (+/-4.6)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -22.6
    (+/-1.4)[316]
    -3.8
    (+/-1.0)[370]
    -19.5
    (+/-1.5)[272]
    -21.3
    (+/-3.6)[57]
    -19.6
    (+/-2.7)[92]
    -11.5
    (+/-1.3)[327]
    -22.6
    (+/-1.7)[234]
    -8.0
    (+/-1.6)[224]
    -9.8
    (+/-1.9)[153]
    prospect
    5
    -1.8
    (+/-1.8)[82]
    16.4
    (+/-2.1)[103]
    -0.5
    (+/-2.1)[91]
    0.8
    (+/-3.1)[47]
    19.6
    (+/-2.7)[92]
    10.6
    (+/-2.3)[95]
    0.9
    (+/-3.3)[41]
    11.8
    (+/-4.5)[25]
    14.1
    (+/-7.0)[11]
    psiblast
    2
    -10.9
    (+/-1.1)[336]
    6.8
    (+/-0.9)[394]
    -8.0
    (+/-1.2)[294]
    -8.0
    (+/-2.0)[67]
    11.5
    (+/-1.3)[327]
    -10.6
    (+/-2.3)[95]
    -6.0
    (+/-1.1)[240]
    2.2
    (+/-1.3)[211]
    -1.5
    (+/-1.8)[143]
    samt99
    5
    -3.3
    (+/-0.9)[261]
    15.7
    (+/-1.3)[271]
    -1.2
    (+/-1.1)[224]
    -5.4
    (+/-2.6)[37]
    22.6
    (+/-1.7)[234]
    -0.9
    (+/-3.3)[41]
    6.0
    (+/-1.1)[240]
    9.7
    (+/-1.5)[162]
    4.3
    (+/-1.9)[105]
    ssearch
    2
    -13.3
    (+/-1.5)[212]
    5.2
    (+/-1.2)[187]
    -10.3
    (+/-1.7)[168]
    -15.4
    (+/-4.6)[22]
    8.0
    (+/-1.6)[224]
    -11.8
    (+/-4.5)[25]
    -2.2
    (+/-1.3)[211]
    -9.7
    (+/-1.5)[162]
    -1.8
    (+/-2.3)[93]
    superfamily
    2
    -7.9
    (+/-1.4)[176]
    7.0
    (+/-1.5)[200]
    -4.4
    (+/-1.7)[128]
    -0.0
    (+/-0.0)[0]
    9.8
    (+/-1.9)[153]
    -14.1
    (+/-7.0)[11]
    1.5
    (+/-1.8)[143]
    -4.3
    (+/-1.9)[105]
    1.8
    (+/-2.3)[93]

    Table for measure Q_LG2

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    6
    6.5
    (+/-0.5)[382]
    0.4
    (+/-0.4)[334]
    0.5
    (+/-0.4)[52]
    6.9
    (+/-0.6)[316]
    0.0
    (+/-0.6)[82]
    5.0
    (+/-0.5)[336]
    1.1
    (+/-0.4)[261]
    3.0
    (+/-0.6)[212]
    3.7
    (+/-0.6)[176]
    blast
    0
    -6.5
    (+/-0.5)[382]
    -6.6
    (+/-0.5)[322]
    -5.7
    (+/-0.9)[74]
    -0.3
    (+/-0.4)[370]
    -7.5
    (+/-0.8)[103]
    -1.8
    (+/-0.4)[394]
    -5.2
    (+/-0.5)[271]
    -3.8
    (+/-0.7)[187]
    -1.7
    (+/-0.6)[200]
    fugue
    6
    -0.4
    (+/-0.4)[334]
    6.6
    (+/-0.5)[322]
    1.2
    (+/-0.6)[59]
    6.8
    (+/-0.6)[272]
    0.5
    (+/-0.6)[91]
    4.9
    (+/-0.5)[294]
    1.3
    (+/-0.4)[224]
    3.0
    (+/-0.7)[168]
    3.7
    (+/-0.8)[128]
    libellula
    4
    -0.5
    (+/-0.4)[52]
    5.7
    (+/-0.9)[74]
    -1.2
    (+/-0.6)[59]
    5.9
    (+/-1.0)[57]
    -0.2
    (+/-0.7)[47]
    3.1
    (+/-0.7)[67]
    1.3
    (+/-0.7)[37]
    3.4
    (+/-1.2)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -6.9
    (+/-0.6)[316]
    0.3
    (+/-0.4)[370]
    -6.8
    (+/-0.6)[272]
    -5.9
    (+/-1.0)[57]
    -6.8
    (+/-1.0)[92]
    -2.0
    (+/-0.5)[327]
    -6.8
    (+/-0.6)[234]
    -3.3
    (+/-0.6)[224]
    -1.8
    (+/-0.8)[153]
    prospect
    5
    -0.0
    (+/-0.6)[82]
    7.5
    (+/-0.8)[103]
    -0.5
    (+/-0.6)[91]
    0.2
    (+/-0.7)[47]
    6.8
    (+/-1.0)[92]
    5.6
    (+/-0.9)[95]
    1.8
    (+/-1.0)[41]
    4.3
    (+/-1.6)[25]
    10.8
    (+/-3.4)[11]
    psiblast
    2
    -5.0
    (+/-0.5)[336]
    1.8
    (+/-0.4)[394]
    -4.9
    (+/-0.5)[294]
    -3.1
    (+/-0.7)[67]
    2.0
    (+/-0.5)[327]
    -5.6
    (+/-0.9)[95]
    -2.4
    (+/-0.4)[240]
    -1.7
    (+/-0.6)[211]
    -1.1
    (+/-0.6)[143]
    samt99
    5
    -1.1
    (+/-0.4)[261]
    5.2
    (+/-0.5)[271]
    -1.3
    (+/-0.4)[224]
    -1.3
    (+/-0.7)[37]
    6.8
    (+/-0.6)[234]
    -1.8
    (+/-1.0)[41]
    2.4
    (+/-0.4)[240]
    2.2
    (+/-0.6)[162]
    2.4
    (+/-0.7)[105]
    ssearch
    4
    -3.0
    (+/-0.6)[212]
    3.8
    (+/-0.7)[187]
    -3.0
    (+/-0.7)[168]
    -3.4
    (+/-1.2)[22]
    3.3
    (+/-0.6)[224]
    -4.3
    (+/-1.6)[25]
    1.7
    (+/-0.6)[211]
    -2.2
    (+/-0.6)[162]
    2.4
    (+/-0.9)[93]
    superfamily
    2
    -3.7
    (+/-0.6)[176]
    1.7
    (+/-0.6)[200]
    -3.7
    (+/-0.8)[128]
    -0.0
    (+/-0.0)[0]
    1.8
    (+/-0.8)[153]
    -10.8
    (+/-3.4)[11]
    1.1
    (+/-0.6)[143]
    -2.4
    (+/-0.7)[105]
    -2.4
    (+/-0.9)[93]

    Table for measure Q_LG1

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    6
    7.2
    (+/-0.6)[382]
    0.1
    (+/-0.4)[334]
    -1.8
    (+/-1.1)[52]
    4.2
    (+/-0.5)[316]
    -0.6
    (+/-0.5)[82]
    7.6
    (+/-0.7)[336]
    1.4
    (+/-0.4)[261]
    2.7
    (+/-0.5)[212]
    1.5
    (+/-0.7)[176]
    blast
    0
    -7.2
    (+/-0.6)[382]
    -7.3
    (+/-0.7)[322]
    -9.4
    (+/-1.2)[74]
    -3.8
    (+/-0.6)[370]
    -7.4
    (+/-0.9)[103]
    0.4
    (+/-0.6)[394]
    -4.2
    (+/-0.7)[271]
    -4.5
    (+/-0.9)[187]
    -5.4
    (+/-0.9)[200]
    fugue
    5
    -0.1
    (+/-0.4)[334]
    7.3
    (+/-0.7)[322]
    -1.2
    (+/-1.4)[59]
    4.0
    (+/-0.5)[272]
    0.8
    (+/-0.6)[91]
    7.2
    (+/-0.7)[294]
    1.9
    (+/-0.5)[224]
    2.1
    (+/-0.7)[168]
    1.2
    (+/-0.8)[128]
    libellula
    5
    1.8
    (+/-1.1)[52]
    9.4
    (+/-1.2)[74]
    1.2
    (+/-1.4)[59]
    4.7
    (+/-1.3)[57]
    0.5
    (+/-1.2)[47]
    8.9
    (+/-1.3)[67]
    5.4
    (+/-1.9)[37]
    5.9
    (+/-1.9)[22]
    0.0
    (+/-0.0)[0]
    loopp
    2
    -4.2
    (+/-0.5)[316]
    3.8
    (+/-0.6)[370]
    -4.0
    (+/-0.5)[272]
    -4.7
    (+/-1.3)[57]
    -3.8
    (+/-0.9)[92]
    3.3
    (+/-0.7)[327]
    -2.5
    (+/-0.7)[234]
    -1.7
    (+/-0.5)[224]
    -2.7
    (+/-0.7)[153]
    prospect
    4
    0.6
    (+/-0.5)[82]
    7.4
    (+/-0.9)[103]
    -0.8
    (+/-0.6)[91]
    -0.5
    (+/-1.2)[47]
    3.8
    (+/-0.9)[92]
    8.3
    (+/-1.1)[95]
    2.7
    (+/-1.4)[41]
    5.4
    (+/-1.7)[25]
    3.1
    (+/-2.2)[11]
    psiblast
    0
    -7.6
    (+/-0.7)[336]
    -0.4
    (+/-0.6)[394]
    -7.2
    (+/-0.7)[294]
    -8.9
    (+/-1.3)[67]
    -3.3
    (+/-0.7)[327]
    -8.3
    (+/-1.1)[95]
    -3.3
    (+/-0.7)[240]
    -3.7
    (+/-0.9)[211]
    -6.9
    (+/-1.1)[143]
    samt99
    3
    -1.4
    (+/-0.4)[261]
    4.2
    (+/-0.7)[271]
    -1.9
    (+/-0.5)[224]
    -5.4
    (+/-1.9)[37]
    2.5
    (+/-0.7)[234]
    -2.7
    (+/-1.4)[41]
    3.3
    (+/-0.7)[240]
    1.0
    (+/-0.6)[162]
    -0.1
    (+/-0.7)[105]
    ssearch
    3
    -2.7
    (+/-0.5)[212]
    4.5
    (+/-0.9)[187]
    -2.1
    (+/-0.7)[168]
    -5.9
    (+/-1.9)[22]
    1.7
    (+/-0.5)[224]
    -5.4
    (+/-1.7)[25]
    3.7
    (+/-0.9)[211]
    -1.0
    (+/-0.6)[162]
    0.3
    (+/-0.8)[93]
    superfamily
    3
    -1.5
    (+/-0.7)[176]
    5.4
    (+/-0.9)[200]
    -1.2
    (+/-0.8)[128]
    -0.0
    (+/-0.0)[0]
    2.7
    (+/-0.7)[153]
    -3.1
    (+/-2.2)[11]
    6.9
    (+/-1.1)[143]
    0.1
    (+/-0.7)[105]
    -0.3
    (+/-0.8)[93]

    Table for measure -lnP_MMT

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    7
    5.0
    (+/-0.3)[382]
    0.7
    (+/-0.2)[334]
    -0.0
    (+/-0.5)[52]
    5.1
    (+/-0.4)[316]
    0.6
    (+/-0.3)[82]
    2.8
    (+/-0.2)[336]
    1.4
    (+/-0.2)[261]
    2.8
    (+/-0.3)[212]
    2.0
    (+/-0.2)[176]
    blast
    0
    -5.0
    (+/-0.3)[382]
    -4.5
    (+/-0.3)[322]
    -4.7
    (+/-0.6)[74]
    0.0
    (+/-0.2)[370]
    -3.9
    (+/-0.5)[103]
    -2.0
    (+/-0.2)[394]
    -4.9
    (+/-0.4)[271]
    -2.3
    (+/-0.3)[187]
    -2.2
    (+/-0.3)[200]
    fugue
    6
    -0.7
    (+/-0.2)[334]
    4.5
    (+/-0.3)[322]
    0.8
    (+/-0.4)[59]
    4.5
    (+/-0.4)[272]
    0.4
    (+/-0.3)[91]
    2.3
    (+/-0.2)[294]
    0.7
    (+/-0.3)[224]
    2.5
    (+/-0.4)[168]
    1.4
    (+/-0.3)[128]
    libellula
    5
    0.0
    (+/-0.5)[52]
    4.7
    (+/-0.6)[74]
    -0.8
    (+/-0.4)[59]
    5.0
    (+/-0.9)[57]
    0.4
    (+/-0.5)[47]
    2.8
    (+/-0.5)[67]
    1.6
    (+/-0.6)[37]
    4.1
    (+/-1.4)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -5.1
    (+/-0.4)[316]
    -0.0
    (+/-0.2)[370]
    -4.5
    (+/-0.4)[272]
    -5.0
    (+/-0.9)[57]
    -3.6
    (+/-0.6)[92]
    -2.4
    (+/-0.3)[327]
    -5.5
    (+/-0.5)[234]
    -2.4
    (+/-0.4)[224]
    -1.8
    (+/-0.4)[153]
    prospect
    5
    -0.6
    (+/-0.3)[82]
    3.9
    (+/-0.5)[103]
    -0.4
    (+/-0.3)[91]
    -0.4
    (+/-0.5)[47]
    3.6
    (+/-0.6)[92]
    2.3
    (+/-0.4)[95]
    0.8
    (+/-0.8)[41]
    2.9
    (+/-1.1)[25]
    2.8
    (+/-1.0)[11]
    psiblast
    2
    -2.8
    (+/-0.2)[336]
    2.0
    (+/-0.2)[394]
    -2.3
    (+/-0.2)[294]
    -2.8
    (+/-0.5)[67]
    2.4
    (+/-0.3)[327]
    -2.3
    (+/-0.4)[95]
    -1.7
    (+/-0.3)[240]
    0.3
    (+/-0.3)[211]
    -0.2
    (+/-0.3)[143]
    samt99
    5
    -1.4
    (+/-0.2)[261]
    4.9
    (+/-0.4)[271]
    -0.7
    (+/-0.3)[224]
    -1.6
    (+/-0.6)[37]
    5.5
    (+/-0.5)[234]
    -0.8
    (+/-0.8)[41]
    1.7
    (+/-0.3)[240]
    1.9
    (+/-0.4)[162]
    1.1
    (+/-0.3)[105]
    ssearch
    2
    -2.8
    (+/-0.3)[212]
    2.3
    (+/-0.3)[187]
    -2.5
    (+/-0.4)[168]
    -4.1
    (+/-1.4)[22]
    2.4
    (+/-0.4)[224]
    -2.9
    (+/-1.1)[25]
    -0.3
    (+/-0.3)[211]
    -1.9
    (+/-0.4)[162]
    -0.1
    (+/-0.5)[93]
    superfamily
    2
    -2.0
    (+/-0.2)[176]
    2.2
    (+/-0.3)[200]
    -1.4
    (+/-0.3)[128]
    -0.0
    (+/-0.0)[0]
    1.8
    (+/-0.4)[153]
    -2.8
    (+/-1.0)[11]
    0.2
    (+/-0.3)[143]
    -1.1
    (+/-0.3)[105]
    0.1
    (+/-0.5)[93]