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EVA summary for category threading, best of first 1 hits

Contents

About threading methods evaluated

Method NprotNweekDetailed results for method
ALL 756 243 method/index.html
3D-PSSM   508187method/3dpssm.html
BLAST   543209method/blast.html
FUGUE   411161method/fugue.html
Libellula   7435method/libellula.html
LOOPP   483184method/loopp.html
Prospect   10435method/prospect.html
PSI-BLAST   478206method/psiblast.html
SAMt99   339141method/samt99.html
ssearch   318156method/ssearch.html
Superfamily   22187method/superfamily.html

TABLES

  • table entries are mean differences between servers ( server in row - server in column )

  • (...) contain standard error of a mean
  • [...] contain sample size

    • Table for measure N3.5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    4
    8.3
    (+/-1.0)[382]
    2.2
    (+/-1.1)[334]
    -0.3
    (+/-1.0)[52]
    19.0
    (+/-1.4)[316]
    -1.1
    (+/-2.1)[82]
    4.0
    (+/-1.0)[336]
    -1.0
    (+/-1.0)[261]
    7.1
    (+/-1.5)[212]
    1.7
    (+/-1.5)[176]
    blast
    1
    -8.3
    (+/-1.0)[382]
    -7.9
    (+/-1.1)[322]
    -8.8
    (+/-2.1)[74]
    8.3
    (+/-1.0)[370]
    -10.8
    (+/-2.3)[103]
    -5.2
    (+/-0.9)[394]
    -10.8
    (+/-1.3)[271]
    -2.4
    (+/-1.2)[187]
    -5.2
    (+/-1.5)[200]
    fugue
    3
    -2.2
    (+/-1.1)[334]
    7.9
    (+/-1.1)[322]
    2.4
    (+/-2.6)[59]
    16.2
    (+/-1.5)[272]
    -1.5
    (+/-2.1)[91]
    2.3
    (+/-1.2)[294]
    -2.5
    (+/-1.2)[224]
    4.9
    (+/-1.7)[168]
    -1.7
    (+/-1.8)[128]
    libellula
    3
    0.3
    (+/-1.0)[52]
    8.8
    (+/-2.1)[74]
    -2.4
    (+/-2.6)[59]
    16.1
    (+/-3.3)[57]
    -3.2
    (+/-3.0)[47]
    2.2
    (+/-1.7)[67]
    -0.4
    (+/-2.6)[37]
    7.9
    (+/-3.3)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -19.0
    (+/-1.4)[316]
    -8.3
    (+/-1.0)[370]
    -16.2
    (+/-1.5)[272]
    -16.1
    (+/-3.3)[57]
    -17.1
    (+/-2.7)[92]
    -15.0
    (+/-1.3)[327]
    -24.5
    (+/-1.7)[234]
    -11.7
    (+/-1.5)[224]
    -15.1
    (+/-1.9)[153]
    prospect
    3
    1.1
    (+/-2.1)[82]
    10.8
    (+/-2.3)[103]
    1.5
    (+/-2.1)[91]
    3.2
    (+/-3.0)[47]
    17.1
    (+/-2.7)[92]
    5.8
    (+/-2.3)[95]
    -3.4
    (+/-2.8)[41]
    6.9
    (+/-3.7)[25]
    5.1
    (+/-6.0)[11]
    psiblast
    3
    -4.0
    (+/-1.0)[336]
    5.2
    (+/-0.9)[394]
    -2.3
    (+/-1.2)[294]
    -2.2
    (+/-1.7)[67]
    15.0
    (+/-1.3)[327]
    -5.8
    (+/-2.3)[95]
    -4.7
    (+/-1.1)[240]
    3.1
    (+/-1.4)[211]
    -1.4
    (+/-1.7)[143]
    samt99
    5
    1.0
    (+/-1.0)[261]
    10.8
    (+/-1.3)[271]
    2.5
    (+/-1.2)[224]
    0.4
    (+/-2.6)[37]
    24.5
    (+/-1.7)[234]
    3.4
    (+/-2.8)[41]
    4.7
    (+/-1.1)[240]
    9.1
    (+/-1.5)[162]
    3.3
    (+/-1.7)[105]
    ssearch
    1
    -7.1
    (+/-1.5)[212]
    2.4
    (+/-1.2)[187]
    -4.9
    (+/-1.7)[168]
    -7.9
    (+/-3.3)[22]
    11.7
    (+/-1.5)[224]
    -6.9
    (+/-3.7)[25]
    -3.1
    (+/-1.4)[211]
    -9.1
    (+/-1.5)[162]
    -1.7
    (+/-2.3)[93]
    superfamily
    2
    -1.7
    (+/-1.5)[176]
    5.2
    (+/-1.5)[200]
    1.7
    (+/-1.8)[128]
    -0.0
    (+/-0.0)[0]
    15.1
    (+/-1.9)[153]
    -5.1
    (+/-6.0)[11]
    1.4
    (+/-1.7)[143]
    -3.3
    (+/-1.7)[105]
    1.7
    (+/-2.3)[93]

    Table for measure N5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    6
    13.0
    (+/-1.2)[382]
    3.9
    (+/-1.2)[334]
    1.7
    (+/-1.7)[52]
    23.7
    (+/-1.6)[316]
    -0.5
    (+/-2.3)[82]
    7.4
    (+/-1.1)[336]
    0.9
    (+/-1.0)[261]
    9.8
    (+/-1.6)[212]
    4.6
    (+/-1.6)[176]
    blast
    1
    -13.0
    (+/-1.2)[382]
    -11.2
    (+/-1.3)[322]
    -11.0
    (+/-2.4)[74]
    8.2
    (+/-1.1)[370]
    -13.7
    (+/-2.6)[103]
    -6.6
    (+/-1.0)[394]
    -14.6
    (+/-1.4)[271]
    -5.0
    (+/-1.3)[187]
    -7.0
    (+/-1.7)[200]
    fugue
    4
    -3.9
    (+/-1.2)[334]
    11.2
    (+/-1.3)[322]
    4.3
    (+/-3.1)[59]
    19.8
    (+/-1.7)[272]
    -0.7
    (+/-2.3)[91]
    4.5
    (+/-1.3)[294]
    -2.0
    (+/-1.3)[224]
    6.5
    (+/-1.9)[168]
    -0.6
    (+/-2.0)[128]
    libellula
    3
    -1.7
    (+/-1.7)[52]
    11.0
    (+/-2.4)[74]
    -4.3
    (+/-3.1)[59]
    18.0
    (+/-3.6)[57]
    -4.9
    (+/-3.6)[47]
    3.0
    (+/-1.9)[67]
    -1.0
    (+/-2.4)[37]
    8.6
    (+/-3.9)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -23.7
    (+/-1.6)[316]
    -8.2
    (+/-1.1)[370]
    -19.8
    (+/-1.7)[272]
    -18.0
    (+/-3.6)[57]
    -19.5
    (+/-2.9)[92]
    -16.6
    (+/-1.4)[327]
    -28.0
    (+/-1.8)[234]
    -14.4
    (+/-1.7)[224]
    -17.0
    (+/-2.1)[153]
    prospect
    4
    0.5
    (+/-2.3)[82]
    13.7
    (+/-2.6)[103]
    0.7
    (+/-2.3)[91]
    4.9
    (+/-3.6)[47]
    19.5
    (+/-2.9)[92]
    7.7
    (+/-2.6)[95]
    -2.3
    (+/-3.4)[41]
    10.3
    (+/-4.6)[25]
    8.4
    (+/-7.4)[11]
    psiblast
    2
    -7.4
    (+/-1.1)[336]
    6.6
    (+/-1.0)[394]
    -4.5
    (+/-1.3)[294]
    -3.0
    (+/-1.9)[67]
    16.6
    (+/-1.4)[327]
    -7.7
    (+/-2.6)[95]
    -6.4
    (+/-1.2)[240]
    2.4
    (+/-1.5)[211]
    -1.0
    (+/-1.9)[143]
    samt99
    5
    -0.9
    (+/-1.0)[261]
    14.6
    (+/-1.4)[271]
    2.0
    (+/-1.3)[224]
    1.0
    (+/-2.4)[37]
    28.0
    (+/-1.8)[234]
    2.3
    (+/-3.4)[41]
    6.4
    (+/-1.2)[240]
    9.5
    (+/-1.7)[162]
    4.3
    (+/-1.8)[105]
    ssearch
    2
    -9.8
    (+/-1.6)[212]
    5.0
    (+/-1.3)[187]
    -6.5
    (+/-1.9)[168]
    -8.6
    (+/-3.9)[22]
    14.4
    (+/-1.7)[224]
    -10.3
    (+/-4.6)[25]
    -2.4
    (+/-1.5)[211]
    -9.5
    (+/-1.7)[162]
    -1.7
    (+/-2.8)[93]
    superfamily
    2
    -4.6
    (+/-1.6)[176]
    7.0
    (+/-1.7)[200]
    0.6
    (+/-2.0)[128]
    -0.0
    (+/-0.0)[0]
    17.0
    (+/-2.1)[153]
    -8.4
    (+/-7.4)[11]
    1.0
    (+/-1.9)[143]
    -4.3
    (+/-1.8)[105]
    1.7
    (+/-2.8)[93]

    Table for measure Q_LG2

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    5
    5.5
    (+/-0.5)[382]
    0.3
    (+/-0.5)[334]
    -0.2
    (+/-0.7)[52]
    7.9
    (+/-0.7)[316]
    0.2
    (+/-0.8)[82]
    3.6
    (+/-0.4)[336]
    0.1
    (+/-0.3)[261]
    2.2
    (+/-0.7)[212]
    2.9
    (+/-0.7)[176]
    blast
    1
    -5.5
    (+/-0.5)[382]
    -5.4
    (+/-0.5)[322]
    -5.4
    (+/-0.9)[74]
    1.3
    (+/-0.4)[370]
    -5.8
    (+/-0.9)[103]
    -2.2
    (+/-0.4)[394]
    -5.3
    (+/-0.5)[271]
    -3.5
    (+/-0.6)[187]
    -2.1
    (+/-0.6)[200]
    fugue
    4
    -0.3
    (+/-0.5)[334]
    5.4
    (+/-0.5)[322]
    1.0
    (+/-0.8)[59]
    7.2
    (+/-0.6)[272]
    0.7
    (+/-0.7)[91]
    3.4
    (+/-0.5)[294]
    0.2
    (+/-0.5)[224]
    2.3
    (+/-0.8)[168]
    1.8
    (+/-0.9)[128]
    libellula
    4
    0.2
    (+/-0.7)[52]
    5.4
    (+/-0.9)[74]
    -1.0
    (+/-0.8)[59]
    7.1
    (+/-1.2)[57]
    -0.3
    (+/-0.9)[47]
    2.5
    (+/-0.6)[67]
    0.8
    (+/-1.0)[37]
    3.0
    (+/-1.2)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -7.9
    (+/-0.7)[316]
    -1.3
    (+/-0.4)[370]
    -7.2
    (+/-0.6)[272]
    -7.1
    (+/-1.2)[57]
    -7.2
    (+/-1.1)[92]
    -4.2
    (+/-0.6)[327]
    -8.9
    (+/-0.7)[234]
    -5.1
    (+/-0.6)[224]
    -4.0
    (+/-0.8)[153]
    prospect
    4
    -0.2
    (+/-0.8)[82]
    5.8
    (+/-0.9)[103]
    -0.7
    (+/-0.7)[91]
    0.3
    (+/-0.9)[47]
    7.2
    (+/-1.1)[92]
    4.0
    (+/-1.0)[95]
    0.9
    (+/-1.0)[41]
    3.7
    (+/-1.5)[25]
    5.6
    (+/-3.0)[11]
    psiblast
    2
    -3.6
    (+/-0.4)[336]
    2.2
    (+/-0.4)[394]
    -3.4
    (+/-0.5)[294]
    -2.5
    (+/-0.6)[67]
    4.2
    (+/-0.6)[327]
    -4.0
    (+/-1.0)[95]
    -2.4
    (+/-0.5)[240]
    -0.9
    (+/-0.6)[211]
    -0.6
    (+/-0.7)[143]
    samt99
    5
    -0.1
    (+/-0.3)[261]
    5.3
    (+/-0.5)[271]
    -0.2
    (+/-0.5)[224]
    -0.8
    (+/-1.0)[37]
    8.9
    (+/-0.7)[234]
    -0.9
    (+/-1.0)[41]
    2.4
    (+/-0.5)[240]
    2.7
    (+/-0.6)[162]
    2.3
    (+/-0.8)[105]
    ssearch
    2
    -2.2
    (+/-0.7)[212]
    3.5
    (+/-0.6)[187]
    -2.3
    (+/-0.8)[168]
    -3.0
    (+/-1.2)[22]
    5.1
    (+/-0.6)[224]
    -3.7
    (+/-1.5)[25]
    0.9
    (+/-0.6)[211]
    -2.7
    (+/-0.6)[162]
    1.5
    (+/-1.0)[93]
    superfamily
    2
    -2.9
    (+/-0.7)[176]
    2.1
    (+/-0.6)[200]
    -1.8
    (+/-0.9)[128]
    -0.0
    (+/-0.0)[0]
    4.0
    (+/-0.8)[153]
    -5.6
    (+/-3.0)[11]
    0.6
    (+/-0.7)[143]
    -2.3
    (+/-0.8)[105]
    -1.5
    (+/-1.0)[93]

    Table for measure Q_LG1

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    4
    8.1
    (+/-0.6)[382]
    0.6
    (+/-0.5)[334]
    -2.4
    (+/-1.0)[52]
    4.2
    (+/-0.6)[316]
    -1.0
    (+/-0.5)[82]
    8.6
    (+/-0.7)[336]
    0.7
    (+/-0.4)[261]
    1.0
    (+/-0.6)[212]
    5.5
    (+/-0.9)[176]
    blast
    0
    -8.1
    (+/-0.6)[382]
    -7.8
    (+/-0.7)[322]
    -10.8
    (+/-1.5)[74]
    -4.7
    (+/-0.7)[370]
    -8.4
    (+/-1.0)[103]
    0.4
    (+/-0.7)[394]
    -5.0
    (+/-0.7)[271]
    -5.7
    (+/-0.9)[187]
    -2.0
    (+/-1.0)[200]
    fugue
    4
    -0.6
    (+/-0.5)[334]
    7.8
    (+/-0.7)[322]
    -3.0
    (+/-1.6)[59]
    3.4
    (+/-0.7)[272]
    -0.4
    (+/-0.8)[91]
    8.1
    (+/-0.8)[294]
    0.7
    (+/-0.6)[224]
    0.4
    (+/-0.9)[168]
    5.6
    (+/-1.2)[128]
    libellula
    6
    2.4
    (+/-1.0)[52]
    10.8
    (+/-1.5)[74]
    3.0
    (+/-1.6)[59]
    4.2
    (+/-1.2)[57]
    0.5
    (+/-1.2)[47]
    8.1
    (+/-1.4)[67]
    4.9
    (+/-1.6)[37]
    5.7
    (+/-1.8)[22]
    0.0
    (+/-0.0)[0]
    loopp
    2
    -4.2
    (+/-0.6)[316]
    4.7
    (+/-0.7)[370]
    -3.4
    (+/-0.7)[272]
    -4.2
    (+/-1.2)[57]
    -3.3
    (+/-0.9)[92]
    4.8
    (+/-0.9)[327]
    -3.4
    (+/-0.8)[234]
    -2.9
    (+/-0.6)[224]
    0.8
    (+/-1.1)[153]
    prospect
    5
    1.0
    (+/-0.5)[82]
    8.4
    (+/-1.0)[103]
    0.4
    (+/-0.8)[91]
    -0.5
    (+/-1.2)[47]
    3.3
    (+/-0.9)[92]
    9.3
    (+/-1.1)[95]
    2.2
    (+/-1.2)[41]
    4.6
    (+/-1.8)[25]
    8.1
    (+/-2.7)[11]
    psiblast
    0
    -8.6
    (+/-0.7)[336]
    -0.4
    (+/-0.7)[394]
    -8.1
    (+/-0.8)[294]
    -8.1
    (+/-1.4)[67]
    -4.8
    (+/-0.9)[327]
    -9.3
    (+/-1.1)[95]
    -4.6
    (+/-0.7)[240]
    -5.7
    (+/-0.9)[211]
    -3.7
    (+/-1.2)[143]
    samt99
    3
    -0.7
    (+/-0.4)[261]
    5.0
    (+/-0.7)[271]
    -0.7
    (+/-0.6)[224]
    -4.9
    (+/-1.6)[37]
    3.4
    (+/-0.8)[234]
    -2.2
    (+/-1.2)[41]
    4.6
    (+/-0.7)[240]
    0.1
    (+/-0.7)[162]
    1.9
    (+/-1.0)[105]
    ssearch
    4
    -1.0
    (+/-0.6)[212]
    5.7
    (+/-0.9)[187]
    -0.4
    (+/-0.9)[168]
    -5.7
    (+/-1.8)[22]
    2.9
    (+/-0.6)[224]
    -4.6
    (+/-1.8)[25]
    5.7
    (+/-0.9)[211]
    -0.1
    (+/-0.7)[162]
    4.6
    (+/-1.2)[93]
    superfamily
    1
    -5.5
    (+/-0.9)[176]
    2.0
    (+/-1.0)[200]
    -5.6
    (+/-1.2)[128]
    -0.0
    (+/-0.0)[0]
    -0.8
    (+/-1.1)[153]
    -8.1
    (+/-2.7)[11]
    3.7
    (+/-1.2)[143]
    -1.9
    (+/-1.0)[105]
    -4.6
    (+/-1.2)[93]

    Table for measure -lnP_MMT

    \score3dpssmblastfuguelibellulalooppprospectpsiblastsamt99ssearchsuperfamily
    3dpssm
    7
    4.1
    (+/-0.3)[382]
    0.7
    (+/-0.2)[334]
    -0.2
    (+/-0.4)[52]
    5.5
    (+/-0.4)[316]
    -0.2
    (+/-0.4)[82]
    1.8
    (+/-0.2)[336]
    1.0
    (+/-0.2)[261]
    2.3
    (+/-0.4)[212]
    1.4
    (+/-0.3)[176]
    blast
    1
    -4.1
    (+/-0.3)[382]
    -3.6
    (+/-0.3)[322]
    -3.5
    (+/-0.6)[74]
    1.2
    (+/-0.2)[370]
    -3.4
    (+/-0.5)[103]
    -2.0
    (+/-0.2)[394]
    -4.5
    (+/-0.4)[271]
    -2.0
    (+/-0.3)[187]
    -2.3
    (+/-0.4)[200]
    fugue
    4
    -0.7
    (+/-0.2)[334]
    3.6
    (+/-0.3)[322]
    0.9
    (+/-0.6)[59]
    4.8
    (+/-0.4)[272]
    0.1
    (+/-0.4)[91]
    1.4
    (+/-0.2)[294]
    0.0
    (+/-0.3)[224]
    1.6
    (+/-0.4)[168]
    0.3
    (+/-0.3)[128]
    libellula
    4
    0.2
    (+/-0.4)[52]
    3.5
    (+/-0.6)[74]
    -0.9
    (+/-0.6)[59]
    4.4
    (+/-0.8)[57]
    -0.4
    (+/-0.7)[47]
    1.5
    (+/-0.5)[67]
    0.1
    (+/-0.4)[37]
    2.1
    (+/-0.9)[22]
    0.0
    (+/-0.0)[0]
    loopp
    0
    -5.5
    (+/-0.4)[316]
    -1.2
    (+/-0.2)[370]
    -4.8
    (+/-0.4)[272]
    -4.4
    (+/-0.8)[57]
    -4.2
    (+/-0.6)[92]
    -3.7
    (+/-0.4)[327]
    -6.7
    (+/-0.5)[234]
    -4.0
    (+/-0.5)[224]
    -3.6
    (+/-0.5)[153]
    prospect
    4
    0.2
    (+/-0.4)[82]
    3.4
    (+/-0.5)[103]
    -0.1
    (+/-0.4)[91]
    0.4
    (+/-0.7)[47]
    4.2
    (+/-0.6)[92]
    1.8
    (+/-0.4)[95]
    0.7
    (+/-0.8)[41]
    2.7
    (+/-1.1)[25]
    2.1
    (+/-1.1)[11]
    psiblast
    2
    -1.8
    (+/-0.2)[336]
    2.0
    (+/-0.2)[394]
    -1.4
    (+/-0.2)[294]
    -1.5
    (+/-0.5)[67]
    3.7
    (+/-0.4)[327]
    -1.8
    (+/-0.4)[95]
    -1.5
    (+/-0.3)[240]
    0.4
    (+/-0.3)[211]
    -0.1
    (+/-0.3)[143]
    samt99
    4
    -1.0
    (+/-0.2)[261]
    4.5
    (+/-0.4)[271]
    -0.0
    (+/-0.3)[224]
    -0.1
    (+/-0.4)[37]
    6.7
    (+/-0.5)[234]
    -0.7
    (+/-0.8)[41]
    1.5
    (+/-0.3)[240]
    1.9
    (+/-0.4)[162]
    0.7
    (+/-0.4)[105]
    ssearch
    2
    -2.3
    (+/-0.4)[212]
    2.0
    (+/-0.3)[187]
    -1.6
    (+/-0.4)[168]
    -2.1
    (+/-0.9)[22]
    4.0
    (+/-0.5)[224]
    -2.7
    (+/-1.1)[25]
    -0.4
    (+/-0.3)[211]
    -1.9
    (+/-0.4)[162]
    -0.3
    (+/-0.6)[93]
    superfamily
    2
    -1.4
    (+/-0.3)[176]
    2.3
    (+/-0.4)[200]
    -0.3
    (+/-0.3)[128]
    -0.0
    (+/-0.0)[0]
    3.6
    (+/-0.5)[153]
    -2.1
    (+/-1.1)[11]
    0.1
    (+/-0.3)[143]
    -0.7
    (+/-0.4)[105]
    0.3
    (+/-0.6)[93]