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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 1277 241 method/index.html
3D-PSSM   803182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
ssearch   16169method/ssearch.html
Superfamily   23479method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 13213D-PSSM21
12.0
(+/-1.8)		11
3.1
(+/-0.3)		15
3.8
(+/-1.6)		21
8.8
(+/-1.6)		28.9
(+/-4.9)		36.5
(+/-5.7)		39.7
(+/-5.2)		44.9
(+/-5.3)		78.8
(+/-2.9)
BLAST15
7.2
(+/-1.2)		3
2.5
(+/-0.2)		8
-2.2
(+/-2.3)		15
5.2
(+/-1.5)		18.5
(+/-3.7)		21.6
(+/-4.0)		20.2
(+/-3.3)		23.8
(+/-3.3)		42.0
(+/-3.7)
FUGUE23
13.4
(+/-1.6)		15
3.5
(+/-0.3)		20
3.2
(+/-2.1)		25
11.5
(+/-1.6)		29.6
(+/-4.7)		38.3
(+/-5.7)		42.3
(+/-4.4)		50.9
(+/-5.2)		82.9
(+/-4.0)
Libellula24
13.3
(+/-1.7)		9
2.5
(+/-0.4)		14
5.2
(+/-1.9)		25
10.9
(+/-1.5)		31.8
(+/-5.0)		39.1
(+/-5.8)		32.6
(+/-5.4)		36.5
(+/-5.9)		89.7
(+/-2.1)
LOOPP5
5.3
(+/-1.5)		5
2.5
(+/-0.3)		8
-0.7
(+/-0.8)		7
1.6
(+/-1.2)		2.7
(+/-1.2)		5.8
(+/-1.9)		21.8
(+/-3.7)		27.6
(+/-4.1)		91.9
(+/-2.0)
Prospect23
11.9
(+/-1.7)		16
3.4
(+/-0.3)		17
5.0
(+/-1.7)		22
8.9
(+/-1.5)		27.9
(+/-4.6)		35.5
(+/-5.3)		38.6
(+/-4.7)		43.5
(+/-4.8)		84.4
(+/-3.6)
SAMt9922
13.5
(+/-1.8)		9
3.1
(+/-0.3)		18
4.1
(+/-1.7)		25
11.4
(+/-1.7)		36.4
(+/-5.5)		44.2
(+/-6.1)		40.9
(+/-5.8)		46.5
(+/-6.0)		71.9
(+/-5.1)
ssearch15
9.9
(+/-1.6)		4
2.6
(+/-0.2)		9
-0.0
(+/-1.0)		19
8.0
(+/-1.7)		20.2
(+/-4.6)		26.8
(+/-5.4)		39.1
(+/-5.0)		44.6
(+/-4.9)		89.9
(+/-2.3)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 25413D-PSSM42
10.3
(+/-0.8)		17
2.8
(+/-0.2)		20
2.3
(+/-1.8)		42
10.9
(+/-1.6)		34.7
(+/-3.8)		44.9
(+/-4.0)		42.0
(+/-4.0)		46.8
(+/-4.2)		79.7
(+/-2.7)
BLAST24
5.3
(+/-0.5)		15
2.9
(+/-0.2)		20
-2.4
(+/-2.6)		26
4.5
(+/-1.4)		24.5
(+/-3.5)		30.3
(+/-3.8)		30.9
(+/-3.4)		33.7
(+/-3.6)		43.1
(+/-3.6)
FUGUE38
8.5
(+/-0.7)		12
2.4
(+/-0.2)		24
3.5
(+/-1.7)		41
9.9
(+/-1.4)		29.9
(+/-3.8)		39.3
(+/-4.1)		36.5
(+/-4.0)		40.3
(+/-4.2)		78.7
(+/-2.8)
LOOPP9
2.6
(+/-0.3)		5
2.2
(+/-0.1)		5
-3.8
(+/-1.3)		11
1.0
(+/-1.4)		10.3
(+/-3.0)		14.3
(+/-3.5)		22.6
(+/-2.8)		28.3
(+/-2.9)		90.1
(+/-1.6)
SAMt9939
9.3
(+/-0.8)		16
2.8
(+/-0.2)		23
1.4
(+/-2.0)		43
10.8
(+/-1.4)		33.6
(+/-3.8)		44.6
(+/-4.0)		46.3
(+/-3.7)		52.2
(+/-3.9)		72.9
(+/-3.6)
ssearch31
7.3
(+/-0.8)		20
3.0
(+/-0.2)		20
0.7
(+/-1.7)		32
7.8
(+/-1.7)		25.3
(+/-3.9)		34.1
(+/-4.3)		42.7
(+/-3.9)		48.4
(+/-4.0)		79.7
(+/-3.2)
Superfamily36
8.2
(+/-0.7)		13
2.6
(+/-0.2)		19
-0.9
(+/-2.3)		37
8.6
(+/-1.6)		28.1
(+/-3.9)		36.6
(+/-4.1)		36.1
(+/-4.0)		41.2
(+/-4.2)		62.9
(+/-3.7)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 315913D-PSSM121
11.2
(+/-0.6)		52
2.8
(+/-0.1)		62
2.2
(+/-0.8)		124
10.0
(+/-0.8)		30.6
(+/-2.1)		40.0
(+/-2.3)		37.7
(+/-2.3)		42.7
(+/-2.4)		79.4
(+/-1.4)
BLAST67
5.8
(+/-0.4)		30
2.6
(+/-0.1)		46
-3.3
(+/-1.2)		77
4.4
(+/-0.7)		19.9
(+/-1.9)		24.2
(+/-2.1)		24.0
(+/-1.8)		27.0
(+/-1.9)		41.5
(+/-1.9)
FUGUE113
10.7
(+/-0.6)		49
2.8
(+/-0.1)		70
2.4
(+/-0.8)		124
10.6
(+/-0.8)		29.4
(+/-2.2)		38.2
(+/-2.5)		36.9
(+/-2.2)		42.7
(+/-2.4)		80.5
(+/-1.6)
LOOPP27
3.6
(+/-0.4)		13
2.2
(+/-0.1)		19
-2.5
(+/-0.6)		39
1.4
(+/-0.7)		7.0
(+/-1.4)		11.1
(+/-1.6)		19.9
(+/-1.5)		25.2
(+/-1.6)		89.5
(+/-1.0)
SAMt99116
10.9
(+/-0.6)		46
2.9
(+/-0.1)		71
1.4
(+/-0.9)		123
10.5
(+/-0.8)		32.9
(+/-2.3)		41.6
(+/-2.5)		40.8
(+/-2.3)		46.2
(+/-2.4)		70.5
(+/-2.2)
ssearch91
8.9
(+/-0.6)		46
2.8
(+/-0.1)		50
0.4
(+/-0.7)		96
8.1
(+/-0.8)		22.6
(+/-2.2)		30.0
(+/-2.4)		38.5
(+/-2.3)		44.2
(+/-2.3)		83.9
(+/-1.4)

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