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EVA summary for category threading, best of first 5 hits

Contents

About threading methods evaluated

Method NprotNweekDetailed results for method
ALL 1277 241 method/index.html
3D-PSSM   803182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
ssearch   16169method/ssearch.html
Superfamily   23479method/superfamily.html

TABLES

  • table entries are mean differences between servers ( server in row - server in column )

  • (...) contain standard error of a mean
  • [...] contain sample size

    • Table for measure N3.5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    6
    14.4
    (+/-1.1)[311]
    3.4
    (+/-0.7)[446]
    2.4
    (+/-1.0)[97]
    20.6
    (+/-1.1)[436]
    3.0
    (+/-1.9)[110]
    -0.0
    (+/-0.7)[365]
    13.5
    (+/-1.5)[161]
    4.3
    (+/-1.4)[180]
    blast
    1
    -14.4
    (+/-1.1)[311]
    -10.6
    (+/-1.2)[246]
    -15.3
    (+/-2.2)[76]
    5.8
    (+/-1.0)[297]
    -11.5
    (+/-2.1)[76]
    -14.5
    (+/-1.3)[240]
    -2.9
    (+/-1.1)[159]
    -4.6
    (+/-1.9)[110]
    fugue
    3
    -3.4
    (+/-0.7)[446]
    10.6
    (+/-1.2)[246]
    1.8
    (+/-1.8)[82]
    17.2
    (+/-1.3)[305]
    2.0
    (+/-1.5)[104]
    -2.2
    (+/-0.9)[279]
    10.1
    (+/-1.5)[161]
    1.9
    (+/-1.8)[143]
    libellula
    3
    -2.4
    (+/-1.0)[97]
    15.3
    (+/-2.2)[76]
    -1.8
    (+/-1.8)[82]
    21.9
    (+/-2.4)[116]
    1.9
    (+/-2.0)[82]
    0.5
    (+/-1.6)[72]
    14.1
    (+/-2.7)[43]
    -1.8
    (+/-0.4)[4]
    loopp
    0
    -20.6
    (+/-1.1)[436]
    -5.8
    (+/-1.0)[297]
    -17.2
    (+/-1.3)[305]
    -21.9
    (+/-2.4)[116]
    -16.7
    (+/-2.8)[96]
    -23.3
    (+/-1.4)[310]
    -10.5
    (+/-1.8)[161]
    -10.5
    (+/-1.7)[144]
    prospect
    3
    -3.0
    (+/-1.9)[110]
    11.5
    (+/-2.1)[76]
    -2.0
    (+/-1.5)[104]
    -1.9
    (+/-2.0)[82]
    16.7
    (+/-2.8)[96]
    -4.7
    (+/-2.4)[61]
    6.6
    (+/-3.3)[35]
    5.1
    (+/-4.4)[15]
    samt99
    5
    0.0
    (+/-0.7)[365]
    14.5
    (+/-1.3)[240]
    2.2
    (+/-0.9)[279]
    -0.5
    (+/-1.6)[72]
    23.3
    (+/-1.4)[310]
    4.7
    (+/-2.4)[61]
    11.8
    (+/-1.3)[161]
    5.1
    (+/-1.9)[103]
    ssearch
    2
    -13.5
    (+/-1.5)[161]
    2.9
    (+/-1.1)[159]
    -10.1
    (+/-1.5)[161]
    -14.1
    (+/-2.7)[43]
    10.5
    (+/-1.8)[161]
    -6.6
    (+/-3.3)[35]
    -11.8
    (+/-1.3)[161]
    -5.1
    (+/-2.6)[56]
    superfamily
    3
    -4.3
    (+/-1.4)[180]
    4.6
    (+/-1.9)[110]
    -1.9
    (+/-1.8)[143]
    1.8
    (+/-0.4)[4]
    10.5
    (+/-1.7)[144]
    -5.1
    (+/-4.4)[15]
    -5.1
    (+/-1.9)[103]
    5.1
    (+/-2.6)[56]

    Table for measure N5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    8
    19.8
    (+/-1.2)[311]
    3.8
    (+/-0.7)[446]
    3.1
    (+/-1.3)[97]
    24.6
    (+/-1.2)[436]
    3.8
    (+/-1.9)[110]
    2.0
    (+/-0.7)[365]
    15.0
    (+/-1.6)[161]
    8.0
    (+/-1.4)[180]
    blast
    1
    -19.8
    (+/-1.2)[311]
    -15.7
    (+/-1.3)[246]
    -21.1
    (+/-2.7)[76]
    4.3
    (+/-1.2)[297]
    -16.5
    (+/-2.4)[76]
    -18.6
    (+/-1.4)[240]
    -6.6
    (+/-1.2)[159]
    -6.3
    (+/-2.0)[110]
    fugue
    4
    -3.8
    (+/-0.7)[446]
    15.7
    (+/-1.3)[246]
    2.3
    (+/-2.0)[82]
    20.6
    (+/-1.5)[305]
    1.1
    (+/-1.9)[104]
    -0.0
    (+/-0.9)[279]
    12.5
    (+/-1.6)[161]
    4.8
    (+/-1.8)[143]
    libellula
    3
    -3.1
    (+/-1.3)[97]
    21.1
    (+/-2.7)[76]
    -2.3
    (+/-2.0)[82]
    25.0
    (+/-2.7)[116]
    1.7
    (+/-2.4)[82]
    2.7
    (+/-1.6)[72]
    16.2
    (+/-3.2)[43]
    1.2
    (+/-0.7)[4]
    loopp
    0
    -24.6
    (+/-1.2)[436]
    -4.3
    (+/-1.2)[297]
    -20.6
    (+/-1.5)[305]
    -25.0
    (+/-2.7)[116]
    -19.5
    (+/-3.1)[96]
    -25.2
    (+/-1.5)[310]
    -12.3
    (+/-2.0)[161]
    -10.8
    (+/-1.9)[144]
    prospect
    2
    -3.8
    (+/-1.9)[110]
    16.5
    (+/-2.4)[76]
    -1.1
    (+/-1.9)[104]
    -1.7
    (+/-2.4)[82]
    19.5
    (+/-3.1)[96]
    -3.3
    (+/-2.9)[61]
    7.6
    (+/-4.1)[35]
    10.5
    (+/-5.3)[15]
    samt99
    4
    -2.0
    (+/-0.7)[365]
    18.6
    (+/-1.4)[240]
    0.0
    (+/-0.9)[279]
    -2.7
    (+/-1.6)[72]
    25.2
    (+/-1.5)[310]
    3.3
    (+/-2.9)[61]
    11.8
    (+/-1.5)[161]
    6.9
    (+/-2.0)[103]
    ssearch
    2
    -15.0
    (+/-1.6)[161]
    6.6
    (+/-1.2)[159]
    -12.5
    (+/-1.6)[161]
    -16.2
    (+/-3.2)[43]
    12.3
    (+/-2.0)[161]
    -7.6
    (+/-4.1)[35]
    -11.8
    (+/-1.5)[161]
    -3.3
    (+/-2.9)[56]
    superfamily
    2
    -8.0
    (+/-1.4)[180]
    6.3
    (+/-2.0)[110]
    -4.8
    (+/-1.8)[143]
    -1.2
    (+/-0.7)[4]
    10.8
    (+/-1.9)[144]
    -10.5
    (+/-5.3)[15]
    -6.9
    (+/-2.0)[103]
    3.3
    (+/-2.9)[56]

    Table for measure Q_LG2

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    6
    6.7
    (+/-0.5)[311]
    0.4
    (+/-0.3)[446]
    0.6
    (+/-0.3)[97]
    7.3
    (+/-0.4)[436]
    0.7
    (+/-0.5)[110]
    0.6
    (+/-0.2)[365]
    3.2
    (+/-0.6)[161]
    3.9
    (+/-0.5)[180]
    blast
    0
    -6.7
    (+/-0.5)[311]
    -6.5
    (+/-0.6)[246]
    -7.0
    (+/-0.9)[76]
    0.1
    (+/-0.5)[297]
    -6.8
    (+/-0.9)[76]
    -6.0
    (+/-0.5)[240]
    -3.6
    (+/-0.5)[159]
    -2.0
    (+/-0.9)[110]
    fugue
    6
    -0.4
    (+/-0.3)[446]
    6.5
    (+/-0.6)[246]
    0.9
    (+/-0.4)[82]
    7.0
    (+/-0.5)[305]
    1.0
    (+/-0.6)[104]
    0.8
    (+/-0.3)[279]
    3.4
    (+/-0.6)[161]
    4.2
    (+/-0.7)[143]
    libellula
    4
    -0.6
    (+/-0.3)[97]
    7.0
    (+/-0.9)[76]
    -0.9
    (+/-0.4)[82]
    5.8
    (+/-0.7)[116]
    0.8
    (+/-0.6)[82]
    -0.2
    (+/-0.5)[72]
    2.5
    (+/-1.0)[43]
    1.2
    (+/-0.1)[4]
    loopp
    0
    -7.3
    (+/-0.4)[436]
    -0.1
    (+/-0.5)[297]
    -7.0
    (+/-0.5)[305]
    -5.8
    (+/-0.7)[116]
    -6.1
    (+/-0.9)[96]
    -7.0
    (+/-0.5)[310]
    -4.3
    (+/-0.7)[161]
    -2.9
    (+/-0.7)[144]
    prospect
    3
    -0.7
    (+/-0.5)[110]
    6.8
    (+/-0.9)[76]
    -1.0
    (+/-0.6)[104]
    -0.8
    (+/-0.6)[82]
    6.1
    (+/-0.9)[96]
    -0.4
    (+/-0.9)[61]
    2.0
    (+/-1.3)[35]
    9.8
    (+/-2.7)[15]
    samt99
    4
    -0.6
    (+/-0.2)[365]
    6.0
    (+/-0.5)[240]
    -0.8
    (+/-0.3)[279]
    0.2
    (+/-0.5)[72]
    7.0
    (+/-0.5)[310]
    0.4
    (+/-0.9)[61]
    2.5
    (+/-0.5)[161]
    3.1
    (+/-0.6)[103]
    ssearch
    2
    -3.2
    (+/-0.6)[161]
    3.6
    (+/-0.5)[159]
    -3.4
    (+/-0.6)[161]
    -2.5
    (+/-1.0)[43]
    4.3
    (+/-0.7)[161]
    -2.0
    (+/-1.3)[35]
    -2.5
    (+/-0.5)[161]
    0.2
    (+/-1.0)[56]
    superfamily
    2
    -3.9
    (+/-0.5)[180]
    2.0
    (+/-0.9)[110]
    -4.2
    (+/-0.7)[143]
    -1.2
    (+/-0.1)[4]
    2.9
    (+/-0.7)[144]
    -9.8
    (+/-2.7)[15]
    -3.1
    (+/-0.6)[103]
    -0.2
    (+/-1.0)[56]

    Table for measure Q_LG1

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    4
    6.7
    (+/-0.7)[311]
    0.1
    (+/-0.3)[446]
    -2.1
    (+/-0.9)[97]
    4.1
    (+/-0.4)[436]
    -0.1
    (+/-0.5)[110]
    0.9
    (+/-0.3)[365]
    2.7
    (+/-0.5)[161]
    1.1
    (+/-0.6)[180]
    blast
    0
    -6.7
    (+/-0.7)[311]
    -6.8
    (+/-0.8)[246]
    -9.9
    (+/-1.6)[76]
    -2.8
    (+/-0.7)[297]
    -7.6
    (+/-1.1)[76]
    -4.4
    (+/-0.8)[240]
    -2.7
    (+/-0.8)[159]
    -4.5
    (+/-1.3)[110]
    fugue
    5
    -0.1
    (+/-0.3)[446]
    6.8
    (+/-0.8)[246]
    -0.8
    (+/-1.0)[82]
    4.4
    (+/-0.4)[305]
    0.6
    (+/-0.6)[104]
    1.4
    (+/-0.4)[279]
    2.8
    (+/-0.5)[161]
    1.4
    (+/-0.7)[143]
    libellula
    5
    2.1
    (+/-0.9)[97]
    9.9
    (+/-1.6)[76]
    0.8
    (+/-1.0)[82]
    5.0
    (+/-0.9)[116]
    1.5
    (+/-1.0)[82]
    4.1
    (+/-1.4)[72]
    5.0
    (+/-1.4)[43]
    -2.1
    (+/-0.2)[4]
    loopp
    1
    -4.1
    (+/-0.4)[436]
    2.8
    (+/-0.7)[297]
    -4.4
    (+/-0.4)[305]
    -5.0
    (+/-0.9)[116]
    -3.4
    (+/-0.8)[96]
    -2.4
    (+/-0.5)[310]
    -1.9
    (+/-0.6)[161]
    -3.2
    (+/-0.7)[144]
    prospect
    3
    0.1
    (+/-0.5)[110]
    7.6
    (+/-1.1)[76]
    -0.6
    (+/-0.6)[104]
    -1.5
    (+/-1.0)[82]
    3.4
    (+/-0.8)[96]
    0.8
    (+/-1.2)[61]
    4.6
    (+/-1.3)[35]
    2.4
    (+/-1.6)[15]
    samt99
    2
    -0.9
    (+/-0.3)[365]
    4.4
    (+/-0.8)[240]
    -1.4
    (+/-0.4)[279]
    -4.1
    (+/-1.4)[72]
    2.4
    (+/-0.5)[310]
    -0.8
    (+/-1.2)[61]
    1.2
    (+/-0.7)[161]
    -0.6
    (+/-0.8)[103]
    ssearch
    2
    -2.7
    (+/-0.5)[161]
    2.7
    (+/-0.8)[159]
    -2.8
    (+/-0.5)[161]
    -5.0
    (+/-1.4)[43]
    1.9
    (+/-0.6)[161]
    -4.6
    (+/-1.3)[35]
    -1.2
    (+/-0.7)[161]
    -1.9
    (+/-1.0)[56]
    superfamily
    3
    -1.1
    (+/-0.6)[180]
    4.5
    (+/-1.3)[110]
    -1.4
    (+/-0.7)[143]
    2.1
    (+/-0.2)[4]
    3.2
    (+/-0.7)[144]
    -2.4
    (+/-1.6)[15]
    0.6
    (+/-0.8)[103]
    1.9
    (+/-1.0)[56]

    Table for measure -lnP_MMT

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    7
    6.3
    (+/-0.3)[311]
    0.7
    (+/-0.2)[446]
    0.2
    (+/-0.3)[97]
    6.3
    (+/-0.3)[436]
    1.0
    (+/-0.3)[110]
    1.2
    (+/-0.2)[365]
    3.5
    (+/-0.4)[161]
    2.2
    (+/-0.2)[180]
    blast
    0
    -6.3
    (+/-0.3)[311]
    -5.6
    (+/-0.4)[246]
    -6.7
    (+/-0.7)[76]
    -0.0
    (+/-0.3)[297]
    -5.3
    (+/-0.7)[76]
    -5.8
    (+/-0.4)[240]
    -3.1
    (+/-0.4)[159]
    -2.4
    (+/-0.5)[110]
    fugue
    7
    -0.7
    (+/-0.2)[446]
    5.6
    (+/-0.4)[246]
    0.8
    (+/-0.4)[82]
    5.2
    (+/-0.4)[305]
    0.9
    (+/-0.4)[104]
    1.0
    (+/-0.3)[279]
    2.9
    (+/-0.4)[161]
    1.6
    (+/-0.3)[143]
    libellula
    4
    -0.2
    (+/-0.3)[97]
    6.7
    (+/-0.7)[76]
    -0.8
    (+/-0.4)[82]
    5.3
    (+/-0.6)[116]
    0.7
    (+/-0.4)[82]
    1.0
    (+/-0.4)[72]
    4.1
    (+/-0.9)[43]
    -0.5
    (+/-1.2)[4]
    loopp
    0
    -6.3
    (+/-0.3)[436]
    0.0
    (+/-0.3)[297]
    -5.2
    (+/-0.4)[305]
    -5.3
    (+/-0.6)[116]
    -3.7
    (+/-0.7)[96]
    -6.2
    (+/-0.4)[310]
    -3.3
    (+/-0.6)[161]
    -2.0
    (+/-0.4)[144]
    prospect
    3
    -1.0
    (+/-0.3)[110]
    5.3
    (+/-0.7)[76]
    -0.9
    (+/-0.4)[104]
    -0.7
    (+/-0.4)[82]
    3.7
    (+/-0.7)[96]
    -0.0
    (+/-0.7)[61]
    1.8
    (+/-1.0)[35]
    2.3
    (+/-0.7)[15]
    samt99
    4
    -1.2
    (+/-0.2)[365]
    5.8
    (+/-0.4)[240]
    -1.0
    (+/-0.3)[279]
    -1.0
    (+/-0.4)[72]
    6.2
    (+/-0.4)[310]
    0.0
    (+/-0.7)[61]
    2.4
    (+/-0.4)[161]
    1.5
    (+/-0.3)[103]
    ssearch
    2
    -3.5
    (+/-0.4)[161]
    3.1
    (+/-0.4)[159]
    -2.9
    (+/-0.4)[161]
    -4.1
    (+/-0.9)[43]
    3.3
    (+/-0.6)[161]
    -1.8
    (+/-1.0)[35]
    -2.4
    (+/-0.4)[161]
    -0.4
    (+/-0.6)[56]
    superfamily
    2
    -2.2
    (+/-0.2)[180]
    2.4
    (+/-0.5)[110]
    -1.6
    (+/-0.3)[143]
    0.5
    (+/-1.2)[4]
    2.0
    (+/-0.4)[144]
    -2.3
    (+/-0.7)[15]
    -1.5
    (+/-0.3)[103]
    0.4
    (+/-0.6)[56]