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EVA summary for category threading, best of first 1 hits

Contents

About threading methods evaluated

Method NprotNweekDetailed results for method
ALL 1277 241 method/index.html
3D-PSSM   803182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
ssearch   16169method/ssearch.html
Superfamily   23479method/superfamily.html

TABLES

  • table entries are mean differences between servers ( server in row - server in column )

  • (...) contain standard error of a mean
  • [...] contain sample size
  • Table for measure N3.5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    3
    9.3
    (+/-1.1)[311]
    1.1
    (+/-0.8)[446]
    -1.1
    (+/-0.9)[97]
    20.5
    (+/-1.2)[436]
    -0.6
    (+/-1.9)[110]
    -1.8
    (+/-0.8)[365]
    8.3
    (+/-1.6)[161]
    2.5
    (+/-1.4)[180]
    blast
    1
    -9.3
    (+/-1.1)[311]
    -8.2
    (+/-1.3)[246]
    -12.4
    (+/-2.0)[76]
    9.7
    (+/-1.0)[297]
    -10.5
    (+/-2.1)[76]
    -12.5
    (+/-1.3)[240]
    -2.6
    (+/-1.2)[159]
    -4.3
    (+/-2.1)[110]
    fugue
    3
    -1.1
    (+/-0.8)[446]
    8.2
    (+/-1.3)[246]
    0.5
    (+/-2.1)[82]
    17.4
    (+/-1.4)[305]
    -0.4
    (+/-1.6)[104]
    -3.2
    (+/-1.0)[279]
    7.0
    (+/-1.6)[161]
    -1.4
    (+/-1.6)[143]
    libellula
    3
    1.1
    (+/-0.9)[97]
    12.4
    (+/-2.0)[76]
    -0.5
    (+/-2.1)[82]
    19.3
    (+/-2.3)[116]
    -0.3
    (+/-2.2)[82]
    -2.3
    (+/-2.0)[72]
    13.5
    (+/-3.2)[43]
    -2.6
    (+/-0.8)[4]
    loopp
    0
    -20.5
    (+/-1.2)[436]
    -9.7
    (+/-1.0)[297]
    -17.4
    (+/-1.4)[305]
    -19.3
    (+/-2.3)[116]
    -18.1
    (+/-2.6)[96]
    -26.0
    (+/-1.5)[310]
    -15.5
    (+/-1.8)[161]
    -15.5
    (+/-1.9)[144]
    prospect
    2
    0.6
    (+/-1.9)[110]
    10.5
    (+/-2.1)[76]
    0.4
    (+/-1.6)[104]
    0.3
    (+/-2.2)[82]
    18.1
    (+/-2.6)[96]
    -5.5
    (+/-2.5)[61]
    7.2
    (+/-3.8)[35]
    3.7
    (+/-4.4)[15]
    samt99
    7
    1.8
    (+/-0.8)[365]
    12.5
    (+/-1.3)[240]
    3.2
    (+/-1.0)[279]
    2.3
    (+/-2.0)[72]
    26.0
    (+/-1.5)[310]
    5.5
    (+/-2.5)[61]
    10.9
    (+/-1.5)[161]
    5.7
    (+/-1.8)[103]
    ssearch
    2
    -8.3
    (+/-1.6)[161]
    2.6
    (+/-1.2)[159]
    -7.0
    (+/-1.6)[161]
    -13.5
    (+/-3.2)[43]
    15.5
    (+/-1.8)[161]
    -7.2
    (+/-3.8)[35]
    -10.9
    (+/-1.5)[161]
    -4.0
    (+/-2.3)[56]
    superfamily
    3
    -2.5
    (+/-1.4)[180]
    4.3
    (+/-2.1)[110]
    1.4
    (+/-1.6)[143]
    2.6
    (+/-0.8)[4]
    15.5
    (+/-1.9)[144]
    -3.7
    (+/-4.4)[15]
    -5.7
    (+/-1.8)[103]
    4.0
    (+/-2.3)[56]

    Table for measure N5A_Gbl%

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    5
    14.8
    (+/-1.3)[311]
    2.4
    (+/-0.9)[446]
    -0.2
    (+/-1.4)[97]
    26.1
    (+/-1.3)[436]
    -0.1
    (+/-2.1)[110]
    -0.3
    (+/-0.8)[365]
    10.2
    (+/-1.7)[161]
    5.3
    (+/-1.6)[180]
    blast
    1
    -14.8
    (+/-1.3)[311]
    -12.5
    (+/-1.4)[246]
    -16.6
    (+/-2.6)[76]
    9.9
    (+/-1.2)[297]
    -14.8
    (+/-2.5)[76]
    -17.1
    (+/-1.5)[240]
    -5.9
    (+/-1.2)[159]
    -6.4
    (+/-2.3)[110]
    fugue
    3
    -2.4
    (+/-0.9)[446]
    12.5
    (+/-1.4)[246]
    1.8
    (+/-2.4)[82]
    21.7
    (+/-1.6)[305]
    0.3
    (+/-1.8)[104]
    -2.6
    (+/-1.1)[279]
    8.5
    (+/-1.8)[161]
    0.3
    (+/-1.8)[143]
    libellula
    3
    0.2
    (+/-1.4)[97]
    16.6
    (+/-2.6)[76]
    -1.8
    (+/-2.4)[82]
    22.4
    (+/-2.6)[116]
    -0.7
    (+/-2.8)[82]
    -1.7
    (+/-1.7)[72]
    14.4
    (+/-3.6)[43]
    -2.5
    (+/-0.5)[4]
    loopp
    0
    -26.1
    (+/-1.3)[436]
    -9.9
    (+/-1.2)[297]
    -21.7
    (+/-1.6)[305]
    -22.4
    (+/-2.6)[116]
    -21.5
    (+/-2.9)[96]
    -30.0
    (+/-1.6)[310]
    -18.9
    (+/-2.1)[161]
    -17.7
    (+/-2.1)[144]
    prospect
    2
    0.1
    (+/-2.1)[110]
    14.8
    (+/-2.5)[76]
    -0.3
    (+/-1.8)[104]
    0.7
    (+/-2.8)[82]
    21.5
    (+/-2.9)[96]
    -4.9
    (+/-2.8)[61]
    8.7
    (+/-4.4)[35]
    6.0
    (+/-5.4)[15]
    samt99
    5
    0.3
    (+/-0.8)[365]
    17.1
    (+/-1.5)[240]
    2.6
    (+/-1.1)[279]
    1.7
    (+/-1.7)[72]
    30.0
    (+/-1.6)[310]
    4.9
    (+/-2.8)[61]
    11.9
    (+/-1.6)[161]
    7.9
    (+/-2.1)[103]
    ssearch
    2
    -10.2
    (+/-1.7)[161]
    5.9
    (+/-1.2)[159]
    -8.5
    (+/-1.8)[161]
    -14.4
    (+/-3.6)[43]
    18.9
    (+/-2.1)[161]
    -8.7
    (+/-4.4)[35]
    -11.9
    (+/-1.6)[161]
    -3.4
    (+/-2.9)[56]
    superfamily
    3
    -5.3
    (+/-1.6)[180]
    6.4
    (+/-2.3)[110]
    -0.3
    (+/-1.8)[143]
    2.5
    (+/-0.5)[4]
    17.7
    (+/-2.1)[144]
    -6.0
    (+/-5.4)[15]
    -7.9
    (+/-2.1)[103]
    3.4
    (+/-2.9)[56]

    Table for measure Q_LG2

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    4
    5.5
    (+/-0.5)[311]
    -0.3
    (+/-0.4)[446]
    -0.6
    (+/-0.6)[97]
    8.0
    (+/-0.5)[436]
    -0.2
    (+/-0.6)[110]
    -0.6
    (+/-0.3)[365]
    2.1
    (+/-0.6)[161]
    3.2
    (+/-0.7)[180]
    blast
    1
    -5.5
    (+/-0.5)[311]
    -5.6
    (+/-0.5)[246]
    -6.0
    (+/-1.0)[76]
    1.8
    (+/-0.5)[297]
    -5.4
    (+/-0.9)[76]
    -5.8
    (+/-0.5)[240]
    -3.7
    (+/-0.5)[159]
    -2.9
    (+/-0.8)[110]
    fugue
    4
    0.3
    (+/-0.4)[446]
    5.6
    (+/-0.5)[246]
    0.8
    (+/-0.6)[82]
    7.8
    (+/-0.5)[305]
    0.7
    (+/-0.6)[104]
    0.0
    (+/-0.4)[279]
    2.7
    (+/-0.7)[161]
    2.0
    (+/-0.7)[143]
    libellula
    3
    0.6
    (+/-0.6)[97]
    6.0
    (+/-1.0)[76]
    -0.8
    (+/-0.6)[82]
    6.5
    (+/-0.8)[116]
    0.4
    (+/-0.7)[82]
    -0.5
    (+/-0.6)[72]
    2.0
    (+/-0.9)[43]
    -3.0
    (+/-0.7)[4]
    loopp
    0
    -8.0
    (+/-0.5)[436]
    -1.8
    (+/-0.5)[297]
    -7.8
    (+/-0.5)[305]
    -6.5
    (+/-0.8)[116]
    -7.0
    (+/-1.0)[96]
    -9.2
    (+/-0.6)[310]
    -6.6
    (+/-0.8)[161]
    -5.1
    (+/-0.8)[144]
    prospect
    3
    0.2
    (+/-0.6)[110]
    5.4
    (+/-0.9)[76]
    -0.7
    (+/-0.6)[104]
    -0.4
    (+/-0.7)[82]
    7.0
    (+/-1.0)[96]
    -0.9
    (+/-0.9)[61]
    1.4
    (+/-1.2)[35]
    4.8
    (+/-2.3)[15]
    samt99
    5
    0.6
    (+/-0.3)[365]
    5.8
    (+/-0.5)[240]
    -0.0
    (+/-0.4)[279]
    0.5
    (+/-0.6)[72]
    9.2
    (+/-0.6)[310]
    0.9
    (+/-0.9)[61]
    2.7
    (+/-0.6)[161]
    3.2
    (+/-0.8)[103]
    ssearch
    2
    -2.1
    (+/-0.6)[161]
    3.7
    (+/-0.5)[159]
    -2.7
    (+/-0.7)[161]
    -2.0
    (+/-0.9)[43]
    6.6
    (+/-0.8)[161]
    -1.4
    (+/-1.2)[35]
    -2.7
    (+/-0.6)[161]
    -1.2
    (+/-1.1)[56]
    superfamily
    3
    -3.2
    (+/-0.7)[180]
    2.9
    (+/-0.8)[110]
    -2.0
    (+/-0.7)[143]
    3.0
    (+/-0.7)[4]
    5.1
    (+/-0.8)[144]
    -4.8
    (+/-2.3)[15]
    -3.2
    (+/-0.8)[103]
    1.2
    (+/-1.1)[56]

    Table for measure Q_LG1

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    4
    7.5
    (+/-0.7)[311]
    0.1
    (+/-0.3)[446]
    -3.1
    (+/-0.8)[97]
    3.9
    (+/-0.4)[436]
    -0.7
    (+/-0.4)[110]
    0.1
    (+/-0.3)[365]
    1.7
    (+/-0.5)[161]
    5.0
    (+/-0.9)[180]
    blast
    0
    -7.5
    (+/-0.7)[311]
    -7.3
    (+/-0.8)[246]
    -11.8
    (+/-1.7)[76]
    -3.7
    (+/-0.8)[297]
    -8.9
    (+/-1.3)[76]
    -5.3
    (+/-0.8)[240]
    -3.8
    (+/-0.8)[159]
    -1.4
    (+/-1.4)[110]
    fugue
    4
    -0.1
    (+/-0.3)[446]
    7.3
    (+/-0.8)[246]
    -2.8
    (+/-1.2)[82]
    4.2
    (+/-0.6)[305]
    -1.2
    (+/-0.8)[104]
    0.8
    (+/-0.5)[279]
    1.9
    (+/-0.6)[161]
    5.9
    (+/-1.1)[143]
    libellula
    7
    3.1
    (+/-0.8)[97]
    11.8
    (+/-1.7)[76]
    2.8
    (+/-1.2)[82]
    4.8
    (+/-0.8)[116]
    1.8
    (+/-1.1)[82]
    4.4
    (+/-1.3)[72]
    5.3
    (+/-1.2)[43]
    2.1
    (+/-0.0)[4]
    loopp
    1
    -3.9
    (+/-0.4)[436]
    3.7
    (+/-0.8)[297]
    -4.2
    (+/-0.6)[305]
    -4.8
    (+/-0.8)[116]
    -3.4
    (+/-0.8)[96]
    -3.0
    (+/-0.6)[310]
    -2.9
    (+/-0.6)[161]
    -0.0
    (+/-1.2)[144]
    prospect
    4
    0.7
    (+/-0.4)[110]
    8.9
    (+/-1.3)[76]
    1.2
    (+/-0.8)[104]
    -1.8
    (+/-1.1)[82]
    3.4
    (+/-0.8)[96]
    0.6
    (+/-0.9)[61]
    4.1
    (+/-1.5)[35]
    9.2
    (+/-2.0)[15]
    samt99
    2
    -0.1
    (+/-0.3)[365]
    5.3
    (+/-0.8)[240]
    -0.8
    (+/-0.5)[279]
    -4.4
    (+/-1.3)[72]
    3.0
    (+/-0.6)[310]
    -0.6
    (+/-0.9)[61]
    0.9
    (+/-0.6)[161]
    1.5
    (+/-1.2)[103]
    ssearch
    2
    -1.7
    (+/-0.5)[161]
    3.8
    (+/-0.8)[159]
    -1.9
    (+/-0.6)[161]
    -5.3
    (+/-1.2)[43]
    2.9
    (+/-0.6)[161]
    -4.1
    (+/-1.5)[35]
    -0.9
    (+/-0.6)[161]
    1.9
    (+/-1.5)[56]
    superfamily
    0
    -5.0
    (+/-0.9)[180]
    1.4
    (+/-1.4)[110]
    -5.9
    (+/-1.1)[143]
    -2.1
    (+/-0.0)[4]
    0.0
    (+/-1.2)[144]
    -9.2
    (+/-2.0)[15]
    -1.5
    (+/-1.2)[103]
    -1.9
    (+/-1.5)[56]

    Table for measure -lnP_MMT

    \score3dpssmblastfuguelibellulalooppprospectsamt99ssearchsuperfamily
    3dpssm
    6
    5.3
    (+/-0.3)[311]
    0.4
    (+/-0.2)[446]
    -0.6
    (+/-0.4)[97]
    6.7
    (+/-0.3)[436]
    0.0
    (+/-0.3)[110]
    0.8
    (+/-0.2)[365]
    2.4
    (+/-0.4)[161]
    1.5
    (+/-0.3)[180]
    blast
    1
    -5.3
    (+/-0.3)[311]
    -4.7
    (+/-0.4)[246]
    -5.6
    (+/-0.6)[76]
    1.7
    (+/-0.3)[297]
    -4.8
    (+/-0.7)[76]
    -5.1
    (+/-0.4)[240]
    -3.1
    (+/-0.4)[159]
    -2.8
    (+/-0.5)[110]
    fugue
    3
    -0.4
    (+/-0.2)[446]
    4.7
    (+/-0.4)[246]
    0.6
    (+/-0.5)[82]
    5.7
    (+/-0.4)[305]
    0.3
    (+/-0.4)[104]
    0.2
    (+/-0.3)[279]
    1.9
    (+/-0.4)[161]
    0.4
    (+/-0.3)[143]
    libellula
    3
    0.6
    (+/-0.4)[97]
    5.6
    (+/-0.6)[76]
    -0.6
    (+/-0.5)[82]
    4.7
    (+/-0.6)[116]
    0.4
    (+/-0.5)[82]
    0.1
    (+/-0.3)[72]
    3.1
    (+/-0.7)[43]
    -8.7
    (+/-0.1)[4]
    loopp
    0
    -6.7
    (+/-0.3)[436]
    -1.7
    (+/-0.3)[297]
    -5.7
    (+/-0.4)[305]
    -4.7
    (+/-0.6)[116]
    -4.3
    (+/-0.7)[96]
    -7.4
    (+/-0.4)[310]
    -5.2
    (+/-0.6)[161]
    -4.2
    (+/-0.5)[144]
    prospect
    3
    -0.0
    (+/-0.3)[110]
    4.8
    (+/-0.7)[76]
    -0.3
    (+/-0.4)[104]
    -0.4
    (+/-0.5)[82]
    4.3
    (+/-0.7)[96]
    -0.3
    (+/-0.7)[61]
    1.8
    (+/-1.1)[35]
    1.7
    (+/-0.8)[15]
    samt99
    4
    -0.8
    (+/-0.2)[365]
    5.1
    (+/-0.4)[240]
    -0.2
    (+/-0.3)[279]
    -0.1
    (+/-0.3)[72]
    7.4
    (+/-0.4)[310]
    0.3
    (+/-0.7)[61]
    2.0
    (+/-0.4)[161]
    1.0
    (+/-0.4)[103]
    ssearch
    2
    -2.4
    (+/-0.4)[161]
    3.1
    (+/-0.4)[159]
    -1.9
    (+/-0.4)[161]
    -3.1
    (+/-0.7)[43]
    5.2
    (+/-0.6)[161]
    -1.8
    (+/-1.1)[35]
    -2.0
    (+/-0.4)[161]
    -1.1
    (+/-0.7)[56]
    superfamily
    3
    -1.5
    (+/-0.3)[180]
    2.8
    (+/-0.5)[110]
    -0.4
    (+/-0.3)[143]
    8.7
    (+/-0.1)[4]
    4.2
    (+/-0.5)[144]
    -1.7
    (+/-0.8)[15]
    -1.0
    (+/-0.4)[103]
    1.1
    (+/-0.7)[56]