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EVA summary for category threading, best of first 1 hits (3)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 1273 241 method/index.html
3D-PSSM   786182method/3dpssm.html
BLAST   457171method/blast.html
FUGUE   561153method/fugue.html
Libellula   16937method/libellula.html
LOOPP   655189method/loopp.html
Prospect   16633method/prospect.html
SAMt99   534136method/samt99.html
Superfamily   23479method/superfamily.html

 


Comparison of threading prediction methods (detail level 3)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 13213D-PSSM21
12.0
(+/-1.8)		11
3.1
(+/-0.3)		15
3.8
(+/-1.6)		21
8.8
(+/-1.6)		28.9
(+/-4.9)		36.5
(+/-5.7)		39.7
(+/-5.2)		44.9
(+/-5.3)		78.8
(+/-2.9)
BLAST15
7.2
(+/-1.2)		3
2.5
(+/-0.2)		8
-2.2
(+/-2.3)		15
5.2
(+/-1.5)		18.5
(+/-3.7)		21.6
(+/-4.0)		20.2
(+/-3.3)		23.8
(+/-3.3)		42.0
(+/-3.7)
FUGUE23
13.4
(+/-1.6)		15
3.5
(+/-0.3)		20
3.2
(+/-2.1)		25
11.5
(+/-1.6)		29.6
(+/-4.7)		38.3
(+/-5.7)		42.3
(+/-4.4)		50.9
(+/-5.2)		82.9
(+/-4.0)
Libellula24
13.3
(+/-1.7)		9
2.5
(+/-0.4)		14
5.2
(+/-1.9)		25
10.9
(+/-1.5)		31.8
(+/-5.0)		39.1
(+/-5.8)		32.6
(+/-5.4)		36.5
(+/-5.9)		89.7
(+/-2.1)
LOOPP5
5.3
(+/-1.5)		5
2.5
(+/-0.3)		8
-0.7
(+/-0.8)		7
1.6
(+/-1.2)		2.7
(+/-1.2)		5.8
(+/-1.9)		21.8
(+/-3.7)		27.6
(+/-4.1)		91.9
(+/-2.0)
Prospect23
11.9
(+/-1.7)		16
3.4
(+/-0.3)		17
5.0
(+/-1.7)		22
8.9
(+/-1.5)		27.9
(+/-4.6)		35.5
(+/-5.3)		38.6
(+/-4.7)		43.5
(+/-4.8)		84.4
(+/-3.6)
SAMt9922
13.5
(+/-1.8)		9
3.1
(+/-0.3)		18
4.1
(+/-1.7)		25
11.4
(+/-1.7)		36.4
(+/-5.5)		44.2
(+/-6.1)		40.9
(+/-5.8)		46.5
(+/-6.0)		71.9
(+/-5.1)

 


Set 2

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 25513D-PSSM43
10.3
(+/-0.8)		17
2.8
(+/-0.2)		20
2.2
(+/-1.8)		43
10.8
(+/-1.6)		34.7
(+/-3.7)		45.1
(+/-4.0)		42.4
(+/-3.9)		47.2
(+/-4.2)		80.0
(+/-2.6)
BLAST25
5.3
(+/-0.5)		15
2.9
(+/-0.2)		20
-2.4
(+/-2.6)		27
4.6
(+/-1.4)		24.9
(+/-3.5)		30.9
(+/-3.7)		31.6
(+/-3.4)		34.4
(+/-3.6)		43.9
(+/-3.7)
FUGUE39
8.5
(+/-0.7)		12
2.4
(+/-0.2)		24
3.4
(+/-1.6)		42
9.9
(+/-1.3)		30.3
(+/-3.7)		39.8
(+/-4.1)		37.0
(+/-3.9)		41.0
(+/-4.1)		79.1
(+/-2.8)
LOOPP10
2.8
(+/-0.3)		5
2.2
(+/-0.1)		5
-3.7
(+/-1.3)		12
1.2
(+/-1.4)		10.9
(+/-3.1)		15.2
(+/-3.5)		23.5
(+/-2.9)		29.2
(+/-2.9)		90.3
(+/-1.6)
SAMt9940
9.3
(+/-0.8)		16
2.8
(+/-0.2)		23
1.4
(+/-2.0)		44
10.7
(+/-1.4)		33.8
(+/-3.7)		45.0
(+/-3.9)		46.5
(+/-3.6)		52.5
(+/-3.8)		73.3
(+/-3.5)
Superfamily37
8.2
(+/-0.7)		13
2.6
(+/-0.2)		19
-1.0
(+/-2.3)		38
8.5
(+/-1.5)		28.4
(+/-3.8)		37.1
(+/-4.1)		35.8
(+/-4.0)		41.0
(+/-4.1)		63.4
(+/-3.6)

 


Set 3

 Sorted alphabetically for identical ranks!     FEWER SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl% N3.5A_ext_CE% N5A_ext_CE% ModN%
common 316013D-PSSM122
11.2
(+/-0.6)		52
2.8
(+/-0.1)		62
2.2
(+/-0.8)		125
9.9
(+/-0.8)		30.6
(+/-2.1)		40.1
(+/-2.3)		37.9
(+/-2.3)		42.9
(+/-2.4)		79.5
(+/-1.4)
BLAST68
5.8
(+/-0.4)		30
2.6
(+/-0.1)		46
-3.3
(+/-1.2)		78
4.4
(+/-0.7)		20.1
(+/-1.9)		24.4
(+/-2.1)		24.2
(+/-1.8)		27.3
(+/-1.9)		41.8
(+/-1.9)
FUGUE114
10.7
(+/-0.6)		49
2.8
(+/-0.1)		70
2.3
(+/-0.8)		125
10.7
(+/-0.8)		29.6
(+/-2.2)		38.3
(+/-2.5)		37.1
(+/-2.2)		42.9
(+/-2.4)		80.6
(+/-1.6)
LOOPP28
3.6
(+/-0.4)		13
2.2
(+/-0.1)		19
-2.5
(+/-0.6)		40
1.5
(+/-0.7)		7.2
(+/-1.4)		11.4
(+/-1.7)		20.2
(+/-1.5)		25.5
(+/-1.6)		89.6
(+/-1.0)
SAMt99117
10.9
(+/-0.6)		46
2.9
(+/-0.1)		71
1.4
(+/-0.9)		124
10.4
(+/-0.8)		32.9
(+/-2.3)		41.7
(+/-2.5)		40.9
(+/-2.3)		46.3
(+/-2.4)		70.6
(+/-2.2)

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