Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom

EVA summary for category threading, best of first 1 hits (1)

Contents

Local link to information about methods evaluated
All prediction results for threading

Common subset 1
Common subset 2
Common subset 3

All prediction results in ASCII (raw text)
Explanations of measures for prediction accuracy
For older versions of the results

About threading prediction methods evaluated

Method		Nprot	Nweek	Detailed results for method
ALL		1273	241	method/index.html

3D-PSSM		786	182	method/3dpssm.html
BLAST		457	171	method/blast.html
FUGUE		561	153	method/fugue.html
Libellula		169	37	method/libellula.html
LOOPP		655	189	method/loopp.html
Prospect		166	33	method/prospect.html
SAMt99		534	136	method/samt99.html
Superfamily		234	79	method/superfamily.html

Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 32 proteins and 7 methods (HTML - ASCII)
- set 2: 55 proteins and 6 methods (HTML - ASCII)
- set 3: 160 proteins and 5 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

(...) contain standard error of a mean

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	32	1	3D-PSSM	21	11	15	21	28.9 (+/-4.9)
			BLAST	15	3	8	15	18.5 (+/-3.7)
			FUGUE	23	15	20	25	29.6 (+/-4.7)
			Libellula	24	9	14	25	31.8 (+/-5.0)
			LOOPP	5	5	8	7	2.7 (+/-1.2)
			Prospect	23	16	17	22	27.9 (+/-4.6)
			SAMt99	22	9	18	25	36.4 (+/-5.5)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	55	1	3D-PSSM	43	17	20	43	34.7 (+/-3.7)
			BLAST	25	15	20	27	24.9 (+/-3.5)
			FUGUE	39	12	24	42	30.3 (+/-3.7)
			LOOPP	10	5	5	12	10.9 (+/-3.1)
			SAMt99	40	16	23	44	33.8 (+/-3.7)
			Superfamily	37	13	19	38	28.4 (+/-3.8)

subset	nprot	rank	Method	Sgnf(-lnP_MMT)	Sgnf(Z_CE)	Sgnf(Q_LG1)	Sgnf(Q_LG2)	N3.5A_Gbl%
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	160	1	3D-PSSM	122	52	62	125	30.6 (+/-2.1)
			BLAST	68	30	46	78	20.1 (+/-1.9)
			FUGUE	114	49	70	125	29.6 (+/-2.2)
			LOOPP	28	13	19	40	7.2 (+/-1.4)
			SAMt99	117	46	71	124	32.9 (+/-2.3)

Last update: Nov 20, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top