EVA home   EVA e-mail   EVA mirrors   -   Secondary structure   Comparative modelling   Threading   Contacts
 
Score definitions for Eva-CM: (You can find general help here).

Server Name: Name of the server.
Model Name: Model name is defined using the PDB code + chain code + model number + server name.
(e.g. 1d2dA_01_SwissModel.pdb).
Number of Models: Total number of selected models based on the query.
Number of Modeled Chains: Total number of unique modeled chains. This number can be different from the total number of models because a server can return more than one model per chain.
Weeks Number: Week number when the model was produced. Is defined by using the year + number of the week in the year.
Weeks: Total number of weeks since a server is running on Eva-CM.
% of Coverage: Percentage of modeled residues with respect to target length.
% Equivalent Positions: Percentage of equivalent C-alpha positions (within 3.5 Angstroms) between the optimally superimposed target and model structures.
% of correct aligned positions: Percentage of equivalent C-alpha positions (within 3.5 Angstroms) between the sequence aligned target and model structures.
Target-Template Similarity: Percent of sequence identity between the optimally superimposed targent and the best template structure.
Chain Difficulty: Ranges from 0 (easiest) to 100 (most difficult). The difficulty level is defined as the percentage of missaligned residues between an optimal structural superimposition alignment and a pairwise sequence alignment method. If the sequence alignment is identical to the structural alignment, the difficulty is 0. If there is no similarity in any structural alignment (CE), the difficulty is 100.
Model Difficulty: Ranges from 0 (easy cases) to 100 (difficult cases). The difficulty level is defined as the percentage of missaligned residues between an optimal structural superimposition alignment and a pairwise sequence alignment method for the modeled region. If the sequence alignment is identical to the structural alignment, the difficulty is 0. If there is no similarity in any structural alignment (CE), the difficulty is 100.
Ca global rmsd: RMSD of C-alpha atoms after global superimposition of the model and the target structures.
Ca global % eq. pos.: Percent of C-alpha equivalent postions (within 3.5 Angstroms) after global superimposition of the model and the target structures.
Ca core rmsd: C-alpha atoms RMSD after core atoms superimposition of the model and the target structures.
Ca core % eq. pos.: Percent of C-alpha equivalent postions (within 3.5 Angstroms) after superimposing the core atoms of the model and the target structures.
Ca non-core rmsd: C-alpha atoms RMSD after superimposing the non-core atoms of the model and the target structures.
Ca non-core % eq. pos.: PErcent of C-alpha equivalent postions (within 3.5 Angstroms) after non-core atoms superimposition of the model and the target structures.
Ca aligned rmsd: C-alpha atoms RMSD after superimposing the 3D aligned region of the model and the target structures.
Ca aligned % eq. pos.: Percent of C-alpha equivalent postions (within 3.5 Angstroms) after superimposition of the 3D aligned region of the model and the target structures.
% Generous Ramachandran angles: Percentage of Ramachandran angles that are in generous region as defined by PROCHECK program.
Bad Contacts: Number of bad contacts in model structure as defined by PROCHECK program.
Overall G-factors: Overall G-factor as defined by PROCHECK program.

 

  EVA home   EVA e-mail   EVA mirrors   -   Secondary structure   Comparative modelling   Threading   Contacts