Sequence Alignments and Protein Families
Practical lessons
Pairwise and Multiple Sequence alignments. Similarity Searches
A selection of links
Tools
NCBI BLAST
WU-BLAST at EMBL
WU-BLAST at EBI
ClustalW at EBI
T-Coffee server
T-Coffee server at the home of T-Coffee
T-Coffee home page
Databases of Protein Families defined by Sequence Similarity
COGs
. Clusters of Orthologous Groups of proteins, at NCBI.
InParanoid
. Database of pairwise orthologs, at CGB, Karolinska Institute, Sweden.
ProtoMap
. Hierarchical classification of all proteins in SWISSPROT and TrEMBL.
Michael Tress
Protein Design Group
