Luis Sanchez & Ana Rojas Mendoza
Structural Bioinformatics Group.
CNB & CNIO (Madrid).
Sardinia,June-06

Some Resources

Pfam
SMART
INTERPRO

PsiBlast
HHpred: For Profile-Sequence & Profile-Profile Comparisons

Some Programs & DataBases

HMMer - Profile-Sequence Comparisons (Pfam & SMART Software)
PsiBlast - Profile-Sequence Comparisons
HHpred - Profile-Profile Comparisons
Uniref at EBI
NCBI sequence Databases
HHpred Profile Databases

Exercises:

  1. Problem 1 - Pfam Database
    • What can you say about the domain organisation of Peptidase_C14 domain
    • And about its Species Distribution?
      • A nice paper about Apoptosis Origin here