BLASTP2 Result
of 
Bork Group's Advanced BLAST2 Search Service at 
EMBL.
back to BLAST2
BLASTP 2.0MP-WashU [16-Dec-1999] [irix6-r10k-L64 23:35:48 16-Dec-1999]
Copyright (C) 1996-1999 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-1999) http://blast.wustl.edu
Query= query_sequence
(344 letters)
Echofilter:
>Filtered+0
MNSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLL
DPANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVG
GWNCRPTADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASATLQSXXXXXXXXX
XXXXXXXXDPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFNTTIGVIAC
DAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFALXXXXXXXXXXXXXXXXLSPET
QXXXXXXXXXXXXXXXXXXXGVLNAQPVAGIPTYRDMFPGAFGS
Database: nrdb-95%
701,238 sequences; 229,823,634 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Query sequence and locally-aligned HSPs from database sequences
0 70 140 210 280
| | | | | |344
query_sequence | __________________________________________________
^ v swissnew|Q10644|YD | __________________________________________________
^ v swissnew|P53425|YD | __________________________________________________
^ v sptrembl|Q9KYV2|Q9 | _________________________________________
^ v sptrembl|Q8FWU6|Q8 | ____________________ _______
^ v sptrembl|Q8FMU2|Q8 | ____________ __________ __
^ v sptrembl|Q8NMQ3|Q8 | ____________ ______ __
^ v sptrembl|Q8R934|Q8 | ____________________ ______________
^ v sptrembl|Q92PJ5|Q9 | _________________________________________
^ v sptremblnew|BAC509 | _________________________________________
^ v sptrembl|Q98NL8|Q9 | _________________________________________
^ v sptrembl|Q8XKH3|Q8 | ____________________ __________
^ v sptrembl|Q8UCD3|Q8 | _________________________________________
^ v sptrembl|Q9A6A7|Q9 | ___________________ ______________
^ v sptrembl|Q9RW87|Q9 | __________________ _________
^ v sptrembl|Q97Y10|Q9 | ____________ _______
^ v sptrembl|Q57326|Q5 | ______
Alignments:
^ = swissnew|Q10644|YD33_MYCTU Hypothetical protein
Rv1333.//:swiss|Q10644|YD33_MYCTU Hypothetical protein
Rv1333.//:trembl|AE007011|AE007011_3 gene: "MT1375"; product:
"conserved hypothetical protein"; Mycobacterium tuberculosis
CDC1551, section 97 of 280 of the complete genome.
//:trembl|Z73902|MTCY130_18 gene: "Rv1333"; product: "hypothetical
protein Rv1333"; Mycobacterium tuberculosis H37Rv complete genome;
segment 59/162 //:pironly|A70771|A70771 probable hydrolase -
Mycobacterium tuberculosis (strain H37RV)//:gp|Z73902|1340099
hypothetical protein Rv1333 [Mycobacterium tuberculosis
H37Rv]//:gp|AE007011|13880983 conserved hypothetical protein
[Mycobacterium tuberculosis CDC1551]
Length = 344
0 70 140 210 280
| | | | | |344
swissnew|Q10644|YD33_ | __________________________________________________
Local hits (HSPs) | __________________________________________________
Score = 1149 (409.5 bits), Expect = 2.5e-116, P = 2.5e-116
Identities = 232/344 (67%), Positives = 232/344 (67%)
Query: 1 MNSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLL 60
MNSITDVGGIRVGHYQRLDPDASLGAGWAC DCRGGAPGTRETDLL
Sbjct: 1 MNSITDVGGIRVGHYQRLDPDASLGAGWACGVTVVLPPPGTVGAVDCRGGAPGTRETDLL 60
Query: 61 DPANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVG 120
DPANSVRFVD VMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVG
Sbjct: 61 DPANSVRFVDALLLAGGSAYGLAAADGVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVG 120
Query: 121 GWNCRPTADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASATLQSXXXXXXXXX 180
GWNCRPTADFGYSAC TASATLQS
Sbjct: 121 GWNCRPTADFGYSACAAAGVDVAVGTVGVGVGARAGALKGGVGTASATLQSGVTVGVLAV 180
Query: 181 XXXXXXXXDPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFNTTIGVIAC 240
DPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFNTTIGVIAC
Sbjct: 181 VNAAGNVVDPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFNTTIGVIAC 240
Query: 241 DAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFALXXXXXXXXXXXXXXXXLSPET 300
DAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL LSPET
Sbjct: 241 DAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFALATGAVAVPPEAGVPAALSPET 300
Query: 301 QXXXXXXXXXXXXXXXXXXXGVLNAQPVAGIPTYRDMFPGAFGS 344
Q GVLNAQPVAGIPTYRDMFPGAFGS
Sbjct: 301 QLVTAVGAAAADCLARAVLAGVLNAQPVAGIPTYRDMFPGAFGS 344
^ = swissnew|P53425|YD33_MYCLE Hypothetical protein
ML1167.//:swiss|P53425|YD33_MYCLE Hypothetical protein
ML1167.//:trembl|U00014|ML014_11 product: "B1549_C2_208";
Mycobacterium leprae cosmid B1549. //:trembl|AL583921|MLEPRTN5_15
gene: "ML1167"; product: "possible hydrolase"; Mycobacterium
leprae strain TN complete genome; segment 5/10
//:pironly|S72794|S72794 hypothetical protein B1549_C2_208 -
Mycobacterium leprae//:gp|U00014|466914 B1549_C2_208 [Mycobacterium
leprae]//:gp|AL583921|13093140 possible hydrolase [Mycobacterium
leprae]
Length = 362
0 80 160 240 320
| | | | | |362
swissnew|P53425|YD33_ | __________________________________________________
Local hits (HSPs) | ________________________________________________
Score = 846 (302.9 bits), Expect = 3.1e-84, P = 3.1e-84
Identities = 182/352 (51%), Positives = 196/352 (55%)
Query: 1 MNSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLL 60
MNSITD+ GI+VGHY RLDPDASLGAGWAC DCRGG PGTRETDLL
Sbjct: 8 MNSITDISGIQVGHYHRLDPDASLGAGWACGVTVVLTPPGTVGAVDCRGGVPGTRETDLL 67
Query: 61 DPANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVG 120
DPANSVRFVD VMRWLEEH RGV M GVVPIVPGAVIFDL VG
Sbjct: 68 DPANSVRFVDAVLLAGGSAYGLAAADGVMRWLEEHERGVVMLGGVVPIVPGAVIFDLSVG 127
Query: 121 GWNCRPTADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------TASATLQSX 172
++CRPTA+FGY AC TAS TL+S
Sbjct: 128 DFHCRPTAEFGYLACQAAYDAAVGGQDATVAVGTVGAGVGARAGVLKGGVGTASITLESG 187
Query: 173 XXXXXXXXXXXXXXXXDPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFN 232
D ATGLPWM DL+ EFALR P EQIA AQL SPL A NT
Sbjct: 188 PTVGAVVVVNSVGDVVDRATGLPWMTDLIDEFALRPPSPEQIAGFAQLKSPLSALNT--- 244
Query: 233 TTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFALXXXXXXXXXXXXX 292
TIGV+A DA LSPAAC+R+A+AA DGLARTIRPAHT LDGDTVFAL
Sbjct: 245 -TIGVVATDATLSPAACQRVAMAAQDGLARTIRPAHTALDGDTVFALATGAVEATATADV 303
Query: 293 XXXLSPETQXXXXXXXXXXXXXXXXXXXGVLNAQPVAGIPTYRDMFPGAFGS 344
+SPET VL A+ VAGIPTY MFPGAFG+
Sbjct: 304 PVAMSPETGLITEVGAAADDCLARAVLVAVLAAESVAGIPTYCGMFPGAFGT 355
^ = sptrembl|Q9KYV2|Q9KYV2 Hypothetical protein
SCO3193.//:tremblnew|AL939115|SCO939115_140 gene: "SCO3193";
"SCE22.10"; product: "conserved hypothetical protein SCE22.10";
Streptomyces coelicolor A3(2) complete genome; segment 12/29
//:trembl|AL939115|SCO939115_140 gene: "SCO3193"; "SCE22.10";
product: "conserved hypothetical protein SCE22.10"; Streptomyces
coelicolor A3(2) complete genome; segment 12/29
//:gp|AL939115|7799513 conserved hypothetical protein SCE22.10
[Streptomyces coelicolor A3(2)]//:gpnew|AL939115|7799513 conserved
hypothetical protein SCE22.10 [Streptomyces coelicolor A3(2)]
Length = 348
0 70 140 210 280
| | | | | |348
sptrembl|Q9KYV2|Q9KYV | __________________________________________________
Local hits (HSPs) | _________________________________________
Score = 350 (128.3 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 97/291 (33%), Positives = 124/291 (42%)
Query: 1 MNSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXX-XXXXXXXXDCRGGAPGTRETDL 59
++++TDV G+ VGH R G GW D RGG PGT+ETD
Sbjct: 3 VDALTDVAGLLVGHATRT------GDGWLTGTTVVLAPEGGAVAGVDVRGGGPGTKETDA 56
Query: 60 LDPANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMD---SGVVPIVPGAVIFD 116
LDP N V+ V VM WLEE RGV + + VVP+VP A +FD
Sbjct: 57 LDPRNLVQKVQAVVLTGGSAYGLDAASGVMAWLEERGRGVRVGPDPAHVVPVVPAACVFD 116
Query: 117 LPVGG-WNCRPTADFGYSACXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXTASATLQ 170
L GG + RP A GY+A TAS L
Sbjct: 117 LGRGGDFRARPDAVTGYAAVAAAHASAPGAAVAEGCVGAGTGAVVGALKGGVGTASTVLD 176
Query: 171 SXXXXXXXXXXXXXXXXXDPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTP 230
S DP TG+ + +L + P E A + + + A N P
Sbjct: 177 SGITVAALVVANAAGSVTDPETGVLY-GELFRGGRVEYPAPEVHEAAGRRLAEVAARNAP 235
Query: 231 --FNTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
NTT+ V+A DA LS A +++A AHDG+AR +RP H DGDTVFAL
Sbjct: 236 PPLNTTLAVVATDAGLSKAQAQKLAGTAHDGIARAVRPVHLLSDGDTVFAL 286
^ = sptrembl|Q8FWU6|Q8FWU6 Conserved hypothetical
protein.//:trembl|AE014534|AE014534_9 gene: "BRA0349"; product:
"conserved hypothetical protein"; Brucella suis 1330 chromosome II
section 30 of 108 of the complete genome. //:gp|AE014534|23463695
conserved hypothetical protein [Brucella suis 1330]
Length = 368
0 80 160 240 320
| | | | | |368
sptrembl|Q8FWU6|Q8FWU | __________________________________________________
Local hits (HSPs) | ________________ ______
Score = 221 (82.9 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 53/133 (39%), Positives = 65/133 (48%)
Query: 3 SITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLDP 62
SITDV GI++GH+ C D RG APGTRETDLLDP
Sbjct: 41 SITDVPGIKLGHHTLTRRPTGCSV-LLCEEGATAGV-------DVRGSAPGTRETDLLDP 92
Query: 63 ANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVGGW 122
N V+ V VMR+LEE+ G + GVVPIVP A++ DL VG +
Sbjct: 93 INFVQKVQAILLSGGSAYGLAAATGVMRYLEENNLGFEIGKGVVPIVPAAILMDLGVGDF 152
Query: 123 NCRPTADFGYSAC 135
+ RP + GY AC
Sbjct: 153 SVRPDEEAGYLAC 165
Score = 143 (55.4 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 29/48 (60%), Positives = 33/48 (68%)
Query: 232 NTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
NTTIG IA +A A ++IA AHDG ARTI P HT DGDT+FAL
Sbjct: 266 NTTIGAIATNAPFGKAELKKIAGMAHDGFARTINPVHTMWDGDTIFAL 313
^ = sptrembl|Q8FMU2|Q8FMU2 Conserved hypothetical
protein.//:tremblnew|AP005222|AP005222_98 product: "conserved
hypothetical protein"; Corynebacterium efficiens YS-314 DNA,
complete genome, section 9/11. //:trembl|AP005222|AP005222_98
product: "conserved hypothetical protein"; Corynebacterium
efficiens YS-314 DNA, complete genome, section 9/11.
//:gp|AP005222|23494250 conserved hypothetical protein
[Corynebacterium efficiens YS-314]
Length = 317
0 70 140 210 280
| | | | | |317
sptrembl|Q8FMU2|Q8FMU | __________________________________________________
Local hits (HSPs) | ______________ __________ __
Score = 170 (64.9 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 210 PAEQIAALAQLSSPLGAFNTPFNTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHT 269
PA + LA + P NTTIGVIA +A ++ A +R+A+ HDGLAR +RP+H+
Sbjct: 203 PAVDVDKLAAVPHPAA----DLNTTIGVIATNAPVTKAQAKRLALTGHDGLARAVRPSHS 258
Query: 270 PLDGDTVFAL 279
P+DGDT+FAL
Sbjct: 259 PMDGDTLFAL 268
Score = 158 (60.7 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 43/94 (45%), Positives = 50/94 (53%)
Query: 46 DCRGGAPGTRETDLLDPANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAM---D 102
D RGG PGTRETDLL+P N+V+ V VM LEE G + D
Sbjct: 40 DVRGGGPGTRETDLLEPHNTVQQVHAVALCGGSAYGLAAADGVMYALEERGIGFPVLGPD 99
Query: 103 S-G-VVPIVPGAVIFDLPVGGWNCRPTADFGYSA 134
G +VPIVP AVIFDL VG RPT + G +A
Sbjct: 100 RPGPIVPIVPAAVIFDLLVGDPTNRPTREHGLTA 133
Score = 45 (20.9 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 322 VLNAQPVAGIPTYRDMFP 339
V +A P G+ TYR++ P
Sbjct: 300 VTSASPGHGLTTYRELIP 317
^ = sptrembl|Q8NMQ3|Q8NMQ3
L-aminopeptidase/D-esterase.//:trembl|AP005281|AP005281_309 gene:
"Cgl2513"; product: "L-aminopeptidase/D-esterase"; Corynebacterium
glutamicum ATCC 13032 DNA, complete genome, section 8/10.
//:gp|AP005281|21325284 L-aminopeptidase/D-esterase
[Corynebacterium glutamicum ATCC 13032]
Length = 320
0 70 140 210 280
| | | | | |320
sptrembl|Q8NMQ3|Q8NMQ | __________________________________________________
Local hits (HSPs) | ______________ _______ __
Score = 169 (64.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 232 NTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
NTTIGV+A DA ++ A +R+A+ AHDGLAR +RP+H+P+DGDT FA+
Sbjct: 224 NTTIGVVATDAPVTKAQAKRLALVAHDGLARAVRPSHSPMDGDTFFAM 271
Score = 166 (63.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 43/91 (47%), Positives = 47/91 (51%)
Query: 46 DCRGGAPGTRETDLLDPANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRG--VAMDS 103
D RGG PGTRETDLL+P NSV+ VM LE G V +
Sbjct: 50 DVRGGGPGTRETDLLEPHNSVQQAHAVVLCGGSAFGLAAADGVMTALENRGIGFPVRPEG 109
Query: 104 GVVPIVPGAVIFDLPVGGWNCRPTADFGYSA 134
+VPIVPGAVIFDL VG RPTA G A
Sbjct: 110 PIVPIVPGAVIFDLLVGDPKNRPTAADGEQA 140
Score = 41 (19.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 322 VLNAQPVAGIPTYRDMFP 339
+L A P G+ ++R++ P
Sbjct: 303 ILTASPGLGLKSFRELLP 320
^ = sptrembl|Q8R934|Q8R934
L-aminopeptidase/D-esterase.//:trembl|AE013132|AE013132_6 gene:
"DmpA2"; product: "L-aminopeptidase/D-esterase";
Thermoanaerobacter tengcongensis strain MB4T, section 159 of 244 of
the complete genome. //:gp|AE013132|20516808
L-aminopeptidase/D-esterase [Thermoanaerobacter tengcongensis]
Length = 324
0 70 140 210 280
| | | | | |324
sptrembl|Q8R934|Q8R93 | __________________________________________________
Local hits (HSPs) | __________________ _____________
Score = 188 (71.2 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 48/134 (35%), Positives = 65/134 (48%)
Query: 4 ITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLDPA 63
I ++ GI+VG+ + ++ AG C D RGGAPGTRETDL+
Sbjct: 8 IKEIEGIKVGNAENVE------AGTGCTVVICEEGATPGV--DVRGGAPGTRETDLIRSE 59
Query: 64 NSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGV--VPIVPGAVIFDLPVGG 121
N V + VMR+LEE +G+ D+GV +PIV A++FDL VG
Sbjct: 60 NLVEKIHAVVLAGGSAFGLDAASGVMRYLEE--KGIGFDTGVLKIPIVASAILFDLAVGN 117
Query: 122 WNCRPTADFGYSAC 135
RP + GY AC
Sbjct: 118 PYIRPDFEMGYKAC 131
Score = 150 (57.9 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 189 DPATGLPWMADLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFNTTIGVIACDAALSPAA 248
DP TG +A L+ E + E+ A + + F NTTIGV+ +A LS A
Sbjct: 192 DPETG-EVIAGLLDEKGEKIISTEE-AIIENIGREKSVFRN--NTTIGVVITNAMLSKAE 247
Query: 249 CRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
++A AHDG AR I+P HT DGDT+F +
Sbjct: 248 ANKVASMAHDGYARAIKPVHTMFDGDTIFVM 278
^ = sptrembl|Q92PJ5|Q92PJ5 Hypothetical protein
R01755.//:trembl|AL591788|SME591788_110 gene: "SMc00512"; product:
"CONSERVED HYPOTHETICAL PROTEIN"; Sinorhizobium meliloti 1021
complete chromosome; segment 7/12 //:gp|AL591788|15074689 CONSERVED
HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 334
0 70 140 210 280
| | | | | |334
sptrembl|Q92PJ5|Q92PJ | __________________________________________________
Local hits (HSPs) | __________________________________________
Score = 304 (112.1 bits), Expect = 8.6e-27, P = 8.6e-27
Identities = 97/286 (33%), Positives = 118/286 (41%)
Query: 2 NSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLD 61
N ITDV G+ VG+ + D L +G GGAPGTRETDLL
Sbjct: 7 NLITDVPGLLVGNAE----DIRLKSG----VTAVLCDPPATAAVQVLGGAPGTRETDLLA 58
Query: 62 PANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVGG 121
P N+V+ VD V L E RG A+ VPIVP A++FDL GG
Sbjct: 59 PHNTVQAVDAIVLSGGSAFGLDAASGVQAALREMGRGFAVGPHRVPIVPAAILFDLANGG 118
Query: 122 ---WN-CRPTADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASATLQSXXXXXX 177
W P D GY A +AS L +
Sbjct: 119 DKDWGRYAPYRDLGYQAARAVSADFGTGSTGAGTGALTATFKGGLGSASTVLSNGITVGA 178
Query: 178 XXXXXXXXXXXDPATGLPWMA--DLVGEFA-LRAP-PAEQIAALAQLSSPLGAFNTPFNT 233
T W A ++ EF L P P Q AA + + NT
Sbjct: 179 LVAVNAIGSATVGDTRHFWAAPFEMDDEFGGLGQPTPWPQDAAAPRFKFRERQASAT-NT 237
Query: 234 TIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
TI VIA DA L+ A +R+AIAAHDG +R + P+HTPLDGD VFAL
Sbjct: 238 TIAVIATDALLTKAEAKRLAIAAHDGFSRALWPSHTPLDGDLVFAL 283
^ = sptremblnew|BAC50943|BAC50943 Blr5678
protein.//:tremblnew|AP005955|AP005955_221 gene: "blr5678";
Bradyrhizobium japonicum DNA, complete genome, strain: USDA110,
section 21/31. //:gp|AP005955|27353954 blr5678 [Bradyrhizobium
japonicum]
Length = 332
0 70 140 210 280
| | | | | |332
sptremblnew|BAC50943| | __________________________________________________
Local hits (HSPs) | __________________________________________
Score = 304 (112.1 bits), Expect = 8.6e-27, P = 8.6e-27
Identities = 86/286 (30%), Positives = 115/286 (40%)
Query: 2 NSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLD 61
N +TD+ G+RVGH + DA + +G D RGG PGTRE LLD
Sbjct: 3 NLLTDIAGVRVGHAE----DAKVASG----TTAIIFDSPAVAAIDVRGGGPGTREDALLD 54
Query: 62 PANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVGG 121
AN+V VD V WL E RG + ++PIVPGA++FDL GG
Sbjct: 55 LANTVERVDAIALSGGSAFGLDTGGGVQAWLAEQGRGHRVREALIPIVPGAILFDLLNGG 114
Query: 122 ---WN-CRPTADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASATLQSXXXXXX 177
W P D GY+A +ASA
Sbjct: 115 DKAWGRFSPYRDLGYAAAAAAGTDFAIGSVGAGLGATTATFKGGLGSASAVTPDGVKVAA 174
Query: 178 XXXXXXXXXXXDPATGLPWM----ADLVGEFALRAPPAEQIAALAQLSSPLG-AFNTPFN 232
G PW ++ GE+ R P + + ++ G A + N
Sbjct: 175 IVAVNAVGSVT-VGNG-PWFWAAPFEVDGEYGGRGLPDKFTDDMLRMRIKGGPAASAREN 232
Query: 233 TTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFA 278
TTIG + DA L+ +R+A+ AH G AR I P H P DGD ++A
Sbjct: 233 TTIGAVVTDAVLTKPQAKRLAMIAHTGFARAIYPVHAPTDGDVLYA 278
^ = sptrembl|Q98NL8|Q98NL8 Hypothetical protein
mll0085.//:trembl|AP002994|AP002994_62 gene: "mll0085";
Mesorhizobium loti DNA, complete genome, section 1/21.
//:gp|AP002994|14021130 hypothetical protein [Mesorhizobium loti]
Length = 341
0 70 140 210 280
| | | | | |341
sptrembl|Q98NL8|Q98NL | __________________________________________________
Local hits (HSPs) | __________________________________________
Score = 295 (108.9 bits), Expect = 7.7e-26, P = 7.7e-26
Identities = 98/292 (33%), Positives = 117/292 (40%)
Query: 2 NSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLD 61
N ITDV G+RVG+ DA L +G GGAPGTRETDLL+
Sbjct: 8 NLITDVAGLRVGN----SSDARLKSG----VTTILCDEPAVAGVQILGGAPGTRETDLLE 59
Query: 62 PANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGV--VPIVPGAVIFDLPV 119
P NS+ + V L E RGV + G VPIVP A++FDL
Sbjct: 60 PHNSIEAIHAVVLSGGSAFGLDAASGVQAALRE--RGVGFEVGGFRVPIVPAAILFDLRN 117
Query: 120 GG---WNCRPT-ADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASATLQSXXXX 175
GG W P D GY A +AS L +
Sbjct: 118 GGDKDWGRYPPYRDLGYEAAQSAATDFQLGTVGAGTGALTAGLKGGLGSASTLLDTGVTI 177
Query: 176 XXXXXXXXXXXXXDPATGLPWMADL-VG-EFA-LRAP---PAEQIAALAQLSSPLGA--F 227
T W A +G EF L P PA+ L +
Sbjct: 178 GALAAVNPTGSVTVGRTRHLWAAPFEIGDEFGGLGYPSPMPADAKEILLKYRDKHAGKQM 237
Query: 228 NTPFNTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
T NTTI VIA DA L+ AA +R+A++AHDG R I P HTP DGD VFAL
Sbjct: 238 ETGGNTTIAVIATDAVLTKAAAKRLAMSAHDGFVRAIWPTHTPADGDLVFAL 289
^ = sptrembl|Q8XKH3|Q8XKH3 Hypothetical protein
CPE1422.//:trembl|AP003190|AP003190_142 gene: "CPE1422"; product:
"conserved hypothetical protein"; Clostridium perfringens str. 13
DNA, complete genome, section 6/10. //:gp|AP003190|18145084
conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 325
0 70 140 210 280
| | | | | |325
sptrembl|Q8XKH3|Q8XKH | __________________________________________________
Local hits (HSPs) | __________________ _________
Score = 179 (68.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 51/134 (38%), Positives = 61/134 (45%)
Query: 4 ITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLDPA 63
ITD+ G ++GH Q D + + G C D RGGAPGTRETDLL+P
Sbjct: 6 ITDIDGFKLGHAQ--DFEGATG----CTVLLCEEGASGGV--DVRGGAPGTRETDLLNPM 57
Query: 64 NSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGV--VPIVPGAVIFDLPVGG 121
V V VM +LE + V D GV VPIV GAV+FDL G
Sbjct: 58 EMVDKVHAIVLSGGSAFGLDSCSGVMEYLEN--KNVGFDVGVAKVPIVCGAVLFDLACGN 115
Query: 122 WNCRPTADFGYSAC 135
RP + G AC
Sbjct: 116 PKIRPNKEMGLEAC 129
Score = 135 (52.6 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 217 LAQLSSPLGAFNTPFNTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTV 276
LA S+P F NTTIG I + + A +IA A +G RTIRPAHT DGDT+
Sbjct: 218 LANYSNPKNVFKG--NTTIGCIVTNGDFNKAEANKIASMAQNGFGRTIRPAHTMFDGDTI 275
Query: 277 FAL 279
F L
Sbjct: 276 FTL 278
^ = sptrembl|Q8UCD3|Q8UCD3 Hypothetical protein
Atu2565.//:trembl|AE008169|AE008169_5 gene: "AGR_C_4649"; product:
"AGR_C_4649p"; Agrobacterium tumefaciens str. C58 circular
chromosome, section 227 of 254 of the complete sequence.
//:pironly|H97666|H97666 hypothetical 33.9K protein rv1333
[imported] - Agrobacterium tumefaciens
(strain//:gp|AE008169|15157757 AGR_C_4649p [Agrobacterium
tumefaciens str. C58 (Cereon)]
Length = 355
0 80 160 240 320
| | | | | |355
sptrembl|Q8UCD3|Q8UCD | __________________________________________________
Local hits (HSPs) | ______________________________________
Score = 265 (98.3 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 86/284 (30%), Positives = 112/284 (39%)
Query: 2 NSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLD 61
N +TD+ GI VG+ D SLG+G GGAPG R+T LLD
Sbjct: 27 NLLTDIDGILVGNVT----DLSLGSG----VTAIVFEKPAVASGSVLGGAPGGRDTGLLD 78
Query: 62 PANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGVVPIVPGAVIFDLPVGG 121
P+ +V VD V L E RG+ + S VPIVP A++ D+ GG
Sbjct: 79 PSMTVETVDALVLSGGSAFGLDAAGGVQAGLREIGRGLQVGSTRVPIVPQAILMDMLNGG 138
Query: 122 ---WNCR-PTADFGYSACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASATLQSXXXXXX 177
W P + GY+A +++ + S
Sbjct: 139 NKDWGLHSPYREMGYAAFKAAGRDPFELGTAGAGTGATTATFKGGLGSASAISSGGYKVA 198
Query: 178 XXXXXXXXXXXDPATGLP-WMA--DLVGEFALRAPPAEQIAALAQLSSPLGAFNTPFNTT 234
T W A ++ GEF PA A L L N TT
Sbjct: 199 AIVAVNALGSATVGTSRHFWSAPFEVHGEFGDHGFPARFTADDTALR--LKGVNLTA-TT 255
Query: 235 IGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFA 278
IG + DA L+ A R++I AHDGLAR + PAH P DGDT+FA
Sbjct: 256 IGAVVTDAVLTKAQAHRLSIMAHDGLARAVLPAHLPSDGDTMFA 299
^ = sptrembl|Q9A6A7|Q9A6A7 Hypothetical protein
CC2187.//:trembl|AE005891|AE005891_1 gene: "CC2187"; product:
"conserved hypothetical protein"; Caulobacter crescentus CB15
section 217 of 359 of the complete genome. //:pironly|B87520|B87520
conserved hypothetical protein CC2187 [imported] - Caulobacter
crescentus//:gp|AE005891|13423688 conserved hypothetical protein
[Caulobacter crescentus CB15]
Length = 330
0 70 140 210 280
| | | | | |330
sptrembl|Q9A6A7|Q9A6A | __________________________________________________
Local hits (HSPs) | ___________________ _____________
Score = 174 (66.3 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 43/94 (45%), Positives = 53/94 (56%)
Query: 189 DPATGLPWMADLVGEFALRAPP--AEQIAALAQLSSPLGA-FNTPFNTTIGVIACDAALS 245
D T W ++ GEF R P A I L S LGA NTT+ ++A A LS
Sbjct: 195 DGETFWAWPFEIDGEFGGRRPGTMAPAIEPLPD-DSKLGARLAAGANTTLALVATTADLS 253
Query: 246 PAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
A +R+A+ AHDG+AR +RP HTP DGD VFAL
Sbjct: 254 TAEAQRMAMMAHDGMARAVRPCHTPFDGDVVFAL 287
Score = 106 (42.4 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 38/130 (29%), Positives = 48/130 (36%)
Query: 2 NSITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLD 61
N ITDV G++VG + D ++ G D RGG P RETD L
Sbjct: 8 NLITDVPGLKVGCVE----DEAVRTG----VTVVLCPEAWTAAVDVRGGGPAVRETDTLR 59
Query: 62 PANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGV--VPIVPGAVIFDLPV 119
P NS V L G+ + +G +PIVP A + DL
Sbjct: 60 PENSFSKAHAICFSGGSVFGLGAADGVASALSNRDVGLRITAGTPAIPIVPAACLHDLSN 119
Query: 120 GG---WNCRP 126
GG W P
Sbjct: 120 GGDKAWGLTP 129
^ = sptrembl|Q9RW87|Q9RW87 Hypothetical protein
DR0782.//:trembl|AE001933|AE001933_5 gene: "DR0782"; product:
"conserved hypothetical protein"; Deinococcus radiodurans R1
section 70 of 229 of the complete chromosome 1.
//:pironly|B75476|B75476 conserved hypothetical protein -
Deinococcus radiodurans (strain R1)//:gp|AE001933|6458494 conserved
hypothetical protein [Deinococcus radiodurans]
Length = 310
0 70 140 210 280
| | | | | |310
sptrembl|Q9RW87|Q9RW8 | __________________________________________________
Local hits (HSPs) | __________________ _________
Score = 129 (50.5 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 221 SSPLGAFNTPF---NTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVF 277
+ P+ A TP NTT+ +A + AL+ A CRR+A AA LAR I P+HT DGD+ F
Sbjct: 212 TGPVAAAFTPGDVENTTLVAVATEHALTKAECRRLADAAQTALARVIHPSHTAWDGDSAF 271
Query: 278 AL 279
L
Sbjct: 272 VL 273
Score = 123 (48.4 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 42/126 (33%), Positives = 53/126 (42%)
Query: 3 SITDVGGIRVGHYQRLDPDASLGAGWACXXXXXXXXXXXXXXXDCRGGAPGTRETDLLDP 62
++T + G +VGH+ DP A G C G +P TRE LL P
Sbjct: 17 TLTAIPGFQVGHWT--DPLAQTG----CTVVLCPPEGAVASASFI-GPSPATREGVLLSP 69
Query: 63 ANSVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDS--GVVPIVPGAVIFDLPVG 120
V V V+R LEE RG+ ++ G VPIVP AVI+DL VG
Sbjct: 70 EKKVERVHALLLTGGSAFGLAAATGVVRVLEE--RGIGHETAFGRVPIVPAAVIYDLGVG 127
Query: 121 GWNCRP 126
RP
Sbjct: 128 NPRVRP 133
^ = sptrembl|Q97Y10|Q97Y10 Hypothetical protein
SSO1540.//:trembl|AE006768|AE006768_8 gene: "SSO1540"; product:
"Conserved hypothetical protein"; Sulfolobus solfataricus section
127 of 272 of the complete genome. //:pironly|B90313|B90313
conserved hypothetical protein [imported] - Sulfolobus
solfataricus//:gp|AE006768|13814773 Conserved hypothetical protein
[Sulfolobus solfataricus]
Length = 282
0 60 120 180 240
| | | | | |282
sptrembl|Q97Y10|Q97Y1 | __________________________________________________
Local hits (HSPs) | _______________ ________
Score = 103 (41.3 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 228 NTPFNTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
NTP TT+GV+ ++ L+ + R+A +A +G + I+P + LDGDTVF +
Sbjct: 203 NTP-GTTLGVVITNSKLNNSDACRVASSAENGFSSVIKPYNLSLDGDTVFTI 253
Score = 77 (32.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 48 RGGAPGTRETDLLDPAN-SVRFVDXXXXXXXXXXXXXXXXXVMRWLEEHRRGVAMDSGV- 105
RGG+P T TDLL P + + V+ V+ L E G + +
Sbjct: 39 RGGSPATLGTDLLRPKHRGNQSVNAIVLTGRSVFGIRVVDAVLMKLFELGVGFKISQNLK 98
Query: 106 VPIVPGAVIFDLPVGGWNCRPTADFGYSA 134
+PIV A IFD PT D+GY+A
Sbjct: 99 IPIVVSASIFDFYDN--TIMPTPDWGYNA 125
^ = sptrembl|Q57326|Q57326 Endo-type 6-aminohexanoate OLIGOMER
hydrolase.//:trembl|D10686|FSNYLC_1 gene: "nylC"; product:
"endotype 6-aminohexanoate-oligomer hydrolase"; Flavobacterium sp.
plasmid pOAD2 gene for endotype 6-aminohexanoat-oligomer hydrolase,
complete cds. //:trembl|D26094|PPPOAD2_2 gene: "nylC"; product:
"endo-type 6-aminohexanoate oligomer hydrolase"; Flavobacterium
sp. plasmid pOAD2 DNA, whole sequence. //:pironly|A47039|A47039
nylon oligomer-degrading enzyme EIII nylC - Flavobacterium
sp.//:gp|D10686|216839 endotype 6-aminohexanoate-oligomer hydrolase
[Flavobacterium sp.]//:gp|D26094|488341 endo-type 6-aminohexanoate
oligomer hydrolase [Flavobacterium sp.]
Length = 355
0 80 160 240 320
| | | | | |355
sptrembl|Q57326|Q5732 | __________________________________________________
Local hits (HSPs) | ______
Score = 105 (42.0 bits), Expect = 0.0059, P = 0.0059
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 232 NTTIGVIACDAALSPAACRRIAIAAHDGLARTIRPAHTPLDGDTVFAL 279
NTTI I + +SP + A H + R I+P HT +DGDT+FA+
Sbjct: 266 NTTISAIVTNVRMSPVELNQFAKQVHSSMHRGIQPFHTDMDGDTLFAV 313
Parameters:
matrix=BLOSUM62
E=0.01
V=500
B=500
hspmax=10
filter=seg
echofilter
stats
qtype
qres
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 344 344 0.010 108 3 11 22 0.19 34
33 0.22 37
Statistics:
Query Expected Observed HSPs HSPs
Frame MatID High Score High Score Reportable Reported
+0 0 71 (32.9 bits) 1149 (531.9 bits) 26 26
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 5359 111947929 25213118 86661709 73102 39
Database: /dove2/data/db/nrdb95
Title: nrdb-95%
Release date: Rel. 18.Mar.2003
Posted date: 8:04:34 AM MET Mar 18, 2003
Last modified: unknown
First created: unknown
Format: BLAST-1.4
# of letters in database: 229,823,634
# of sequences in database: 701,238
# of database sequences satisfying E: 16
No. of states in DFA: 565 (111 KB)
Total size of DFA: 225 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 154.31u 3.18s 157.49t Elapsed: 00:00:48
Total cpu time: 154.38u 3.24s 157.62t Elapsed: 00:00:48
Start: Tue Mar 18 18:10:01 2003 End: Tue Mar 18 18:10:49 2003
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