RepeatMasker summary:
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file name: RMemail18880.seq
sequences: 1
total length: 2481 bp (2481 bp excl N-runs)
GC level: 54.86 %
bases masked: 69 bp ( 2.78 %)
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number of length percentage
elements* occupied of sequence
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SINEs: 1 69 bp 2.78 %
ALUs 0 0 bp 0.00 %
MIRs 1 69 bp 2.78 %
LINEs: 0 0 bp 0.00 %
LINE1 0 0 bp 0.00 %
LINE2 0 0 bp 0.00 %
L3/CR1 0 0 bp 0.00 %
LTR elements: 0 0 bp 0.00 %
MaLRs 0 0 bp 0.00 %
ERVL 0 0 bp 0.00 %
ERV_classI 0 0 bp 0.00 %
ERV_classII 0 0 bp 0.00 %
DNA elements: 0 0 bp 0.00 %
MER1_type 0 0 bp 0.00 %
MER2_type 0 0 bp 0.00 %
Unclassified: 0 0 bp 0.00 %
Total interspersed repeats: 69 bp 2.78 %
Small RNA: 0 0 bp 0.00 %
Satellites: 0 0 bp 0.00 %
Simple repeats: 0 0 bp 0.00 %
Low complexity: 0 0 bp 0.00 %
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* most repeats fragmented by insertions or deletions
have been counted as one element
The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/07/2001 , default mode
run with cross_match version 0.990329
RepBase Update 6.3, vs 05152001
Repeats:
SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID
271 21.7 4.3 1.4 human 1318 1386 (1095) C MIR SINE/MIR (131) 131 61 1
Masked Sequence:
>human
AGCTTTCTTCTTTTCCCTGTTGCTCAAATAAATAGTGTTCTTTGCTCAAA
CCCCCTTTCCCTCCTCCTTCTGCAATCTCAGCGCCTAGCGAAATCTGTTT
TCTTCATTGTAACCTCAGCTTCACCGCAATTAATTTTTTTTCCCTCTGGT
CACAAGATAATTCCTGACGCCAGTGAGTCTGGAGGTCAGACGAACAGCAA
ATTGGGGAACAAGGCGGCACTAATTCCTTACAAGTTCCTTGAAAAATCTT
TCGCTTAAAAAAAACGGGGGGTGGGGGGAGCTTCTTTGCTGTTCAGGGAT
TTATGCCTCGCGGAGCTGTGGCTCGAACCAGTGTTGGCTAAGGCGGACTG
GCAGGGGCAGGGAAGCTCAAAGATCTGGGGTGCTGCCAGGAAAAAGCAAA
TTCTGGAAGTTAATGGTTTTGAGTGATTTTTAAATCCTTGCTGGCGGAGA
GGCCCGCCTCTCCCCGGTATCAGCGCTTCCTCATTCTTTGAATCCGCGGC
TCCGCGGTCTTCGGCGTCAGACCAGCCGGAGGAAGCCTGTTTGCAATTTA
AGCGGGCTGTGAACGCCCAGGGCCGGCGGGGGCAGGGCCGAGGCGGGCCA
TTTTGAATAAAGAGGCGTGCCTTCCAGGCAGGCTCTATAAGTGACCGCCG
CGGCGAGCGTGCGCGCGTTGCAGGTCACTGTAGCGGACTTCTTTTGGTTT
TCTTTCTCTTTGGGGCACCTCTGGACTCACTCCCCAGCATGAAGGCGCTG
AGCCCGGTGCGCGGCTGCTACGAGGCGGTGTGCTGCCTGTCGGAACGCAG
TCTGGCCATCGCCCGGGGCCGAGGGAAGGGCCCGGCAGCTGAGGAGCCGC
TGAGCTTGCTGGACGACATGAACCACTGCTACTCCCGCCTGCGGGAACTG
GTACCCGGAGTCCCGAGAGGCACTCAGCTTAGCCAGGTGGAAATCCTACA
GCGCGTCATCGACTACATTCTCGACCTGCAGGTAGTCCTGGCCGAGCCAG
CCCCTGGACCCCCTGATGGCCCCCACCTTCCCATCCAGGTAAGCCTCGAA
GTCGGGACAGGGCTGAACACCCAGGCAAGGATGCTGCGGGACCCTCGGAG
CTCCCGATTGCCTCGCGTAACTCTTCCCTCTTTTCCTCTAATCAGACAGC
CGAGCTCGCTCCGGAACTTGTCATCTCCAACGACAAAAGGAGCTTTTGCC
ACTGACTCGGCCGTGTCCTGACACCTCCAGGTGAGTATCTCCTCTCTTGG
AGAGGGAGGTTTAAACGGCAAGTCCTGGAGTTGGCAGACGTTTTGAAAAA
TTGCCACTCACTCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCATGTGATGT
GCATTTAAGCCTTAATGCGCCTGGCCCTGCCTCCGCAGTGGCCGAGGTCT
GGCAAGTAGACATGGTCCGACTAAATACAAGTCTTTCTGTTCCATGTTGT
ATAGGAGCTGTCTTCGGCAGCCCCCTCCCAGCTAGTGTCAATTCCAAGTA
GGAGGGGTAGCGCAACGTCCGCCTGTGGTCTTTGGCGCCAACTGGGTGGG
GGCAGCGTGGGGGGCGGAGTTATCAGGCTGGAGGTACAGACCAAGTTTCC
TCCCTGGCGCCGGCCAGTCTGCGGACGGCCCCCGCCTCGGCACGCTCGGC
GGAAACTGACTGCTCCTTGGTCTTCTTTCCTCCCCCGCCCAGAACGCAGG
TGCTGGCGCCCGTTCTGCCTGGGACCCCGGGAACCTCTCCTGCCGGAAGC
CGGACGGCAGGGATGGGCCCCAACTTCGCCCTGCCCACTTGACTTCACCA
AATCCCTTCCTGGAGACTAAACCTGGTGCTCAGGAGCGAAGGACTGTGAA
CTTGTGGCCTGAAGAGCCAGAGCTAGCTCTGGCCACCAGCTGGGCGACGT
CACCCTGCTCCCACCCCACCCCCAAGTTCTAAGGTCTTTTCAGAGCGTGG
AGGTGTGGAAGGAGTGGCTGCTCTCCAAACTATGCCAAGGCGGCGGCAGA
GCTGGTCTTCTGGTCTCCTTGGAGAAAGGTTCTGTTGCCCTGATTTATGA
ACTCTATAATAGAGTATATAGGTTTTGTACCTTTTTTACAGGAAGGTGAC
TTTCTGTAACAATGCGATGTATATTAAACTTTTTATAAAAGTTAACATTT
TGCATAATAAACGATTTTTAAACACTTGTGTATATGATGACACCCGTCTC
CATTAAGTACTAATGATGCTTTCTCGCACATGGCCGAATTTTGGGAGCTT
TGGGAAAGTGAACTTGCTTATTCTACGAGAGGGAAATGAAAAACTGCCTG
GTTGAGAGGGGATGGGGTGGAGAGAGAAGGGTTCATGATGGGAGTCTCAT
GTCCATTGAGGGATGGGTGCAGAGAAAAGTTCTGGCTCTGCCTCATTATT
TCAGAGATGAAACCAGAGACTGGTGCAAGCT