DNA



Data information Databases

From DDBJ

  • Genebank
  • EMBL
  • DDBJ

  • Documentation
    Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL.
    GeneBank
    [ Abstract ] [ Full-text HTML ]
    Nucleic Acids Res 2000, Vol. 28 (1), 15-18

    Stoesser G., Baker W., van den Broek A., Camon E., Garcia-Pastor M., Kanz C., Kulikova T., Lombard V., Lopez R., Parkinson H., Redaschi N., Sterk P., Stoehr P., Tuli MA
    The EMBL Nucleotide Sequence Database
    [ Abstract ] [ Full-text HTML ] [ Full-text PDF ] [ Supplementary Material ]
    Nucleic Acids Res 2001, Vol. 29 (1), 17-21

    Miyazaki S and Sugawara H,
    "Development of DDBJ-XML and its application to a database of cDNA"
    Genome Informatics 2000, Universal Academy Press, Inc (Tokyo), 380-381, 2000
    Miyazaki S and Sugawara H,
    "Visualization of features in flat file by use of DDBJ-XML"
    Currents in Computational Molecular Biology 2001 (Montreal), 249-250, 2001
    Tools
    Many of the DNA sequence databases are text index databases and there are two ways of searching. Either look for entries which contains certain word, or by sequence similarity Tools (blast, fasta ...).

    Blast servers:




    Protein Design Group.
    Centro Nacional de Biotecnologia ( CNB - CSIC ).
    Campus Universidad Autonoma de Madrid.   Cantoblanco.
    28049 Madrid. Spain.
    Phone:+34-91-585 46 69
    Fax:     +34-91-585 45 06

    Ramon Alonso-Allende
    Paulino Gomez-Puertas
    Alfonso Valencia