B-DNA Structure for Molecular Biology

  Show the
DNA, only.
  Water molecules in:
Major groove.
Minor groove.
Whole complex.

  Rotate
X 90° X -90°
Y 90° Y -90°

  Distances
DNA, one turn
  (length in Å units)
DNA, diameter
  (width in Å units)

Reset

The B-Form DNA Structure.

The "Dickerson Dodecamer" is shown using the Ball & Stick display. The 5' and 3' ends of each chain are labeled.

View an A-T or G-C base pair:
An A-T base pair (distance in Å between C1' carbons). Remove distances.
Number the adenine and thymine ring positions.
A G-C base pair (distance in Å between C1' carbons).
Number the guanine and cytosine ring positions.
A G-C base pair (dot surface) above an A-T base pair (Spacefill).
Place any of the above base pairs in the original double helix.

Viewing tips:

  • Use the buttons to the right of the image to show only portions of the structure; then use the Chime menu to display or color the molecule. The rotate buttons act on the entire structure. Remove the distance monitors with a second click.
  • On this and other pages that display DNA structures, the nucleotides can be identified by choosing Shapely under the Chime Colors menu. The Shapely colors for DNA are:

Go to the one-page display of one of these structures:
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Back to Structures for Molecular Biology at CMU.
The image displayed on this page requires the Chemscape Chime plug-in.

A description of its use at this site can be found at the Chime Features page.
Coordinates from 1BNA.pdb.